Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq8682 132 6e-26 seq16876 118 1e-21 seq1209 105 8e-18 >seq8682 Length=13014 Score = 132 bits (146), Expect = 6e-26 Identities = 180/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 170383 ATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAAT 170442 || || || || ||||| || ||||| || | |||||||||||||| || || ||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 170443 AGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCA 170502 |||| | | || |||||||| ||| | | ||||||||| | || ||||| || | Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 170503 ATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTA 170562 | |||||| |||| ||||| || ||| | ||||| || || |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 170563 GATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGT 170622 ||| | ||| ||| || ||| ||||| || || ||||| | || || || ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 170623 ATGGAAGTAAT 170633 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 118 bits (130), Expect = 1e-21 Identities = 187/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 170417 TCTTCCAATATGCTA--GCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 ||||||||||||||| | || ||||| ||| | | || || ||||| ||| | | Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 |||||| || | | ||| || | | |||||| |||| ||||| || ||| | || Sbjct 28118 GCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGC 170594 | | | || |||||||| | | || ||| | ||| | ||| ||| ||| ||| | Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 ||| || ||||| || || || |||| |||||| |||||||| |||||||| || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 170655 CTTCCCACTTGACTTGGCAACTGCTGA 170681 |||||| || ||| | || |||| ||| Sbjct 28294 CTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 105 bits (116), Expect = 8e-18 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 170311 ATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAA 170370 ||||| || || | ||| || || || || | || || | |||||| ||||| ||| Sbjct 32466 ATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAA 32525 Query 170371 GAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCT 170430 ||||| | | || || || || ||||| || ||||| || | ||||||||||||||| Sbjct 32526 GAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 32585 Query 170431 A--GCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCA 170488 | | || ||||| || | | | || ||||||| ||| | | |||| |||| | | Sbjct 32586 AATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTA 32645 Query 170489 TCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCA 170548 ||||||| || | | |||||| |||| ||| | || ||| | ||||| | || |||| Sbjct 32646 TCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCA 32705 Query 170549 AC 170550 || Sbjct 32706 AC 32707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582554769171200