Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq8166 107 1e-18 seq3045 96.9 2e-15 seq26478 91.5 1e-13 seq21318 82.4 5e-11 >seq8166 Length=147256 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| |||| |||| |||||||| || ||||| || Sbjct 120257 TCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAA 120316 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 120317 ATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTAAC--AT 120374 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| ||| || |||| |||||||| || || || || || || Sbjct 120375 --TATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 120432 Query 34967 CACAAAGATCTGCATATT 34984 ||| |||||||||||||| Sbjct 120433 CACGAAGATCTGCATATT 120450 >seq3045 Length=115554 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| | | || | ||||| || || ||||||||||| ||||| | Sbjct 11038 TTCCTCCCCTCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAG 11097 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | | |||| || ||||| ||||||||||| || | | ||||||||| | | Sbjct 11098 CAAGAGTCCTTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 11157 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT-TCACCGG---CC 34928 | | || ||||| || ||| ||| || || || | ||||| | ||| | Sbjct 11158 GGATGCCTTCCTTATCCTGAATTTTCGCCTTAAC--AT--TGTCGATGGTATCGGAACTC 11213 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||| ||||||||||| || | |||||| || |||||||||||| Sbjct 11214 TCGACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCATA 11267 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||| ||||||||||| || || | |||| |||| |||| |||| Sbjct 11515 CAAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCA 11574 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 ||| |||||||||||||| | || ||||||||| | || | || ||||| || | Sbjct 11575 ACTGCTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGA 11634 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| || ||| | || | || | ||| || || | ||| ||||| |||| Sbjct 11635 TCTTGGCCTTCACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTC 11694 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| || ||||| ||||| Sbjct 11695 CGGTAAGGGTCTTGACGAAGATTTGCAT 11722 >seq26478 Length=75715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| | |||| |||| | || || ||||| |||||||| || Sbjct 13930 TTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 13871 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||| | || | ||||||||||| ||||| ||||| Sbjct 13870 AATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATT 13811 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || |||| ||| ||||| || ||||| || || ||||| Sbjct 13810 GTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCAC 13751 Query 34970 AAAGATCTGCAT-ATTCGTAGACTT 34993 ||||||||||| ||| | || ||| Sbjct 13750 GAAGATCTGCATGATTGGGAGGCTT 13726 >seq21318 Length=12341 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 ||||||||||| || ||||| | |||| | || |||| |||| |||||||| |||| Sbjct 4098 TCTTTCTGAATATTGTAGTCAGCCAAAG--TCCGACCATCCTCCAATTGTTTTCCAGCAA 4155 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || |||| || || ||| | || | |||||||||||| ||||||| || || Sbjct 4156 AGATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTCGCCTTCAC-- 4213 Query 34909 ATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | ||||| || | ||||| || | || || || ||||| || || ||| Sbjct 4214 AT--TGTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTCAGCGTC 4271 Query 34965 TTCACAAAGATCTGCAT 34981 ||||| || |||||||| Sbjct 4272 TTCACGAAAATCTGCAT 4288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324474359914944