Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq8682 152 6e-32 seq1209 122 1e-22 seq16876 107 2e-18 >seq8682 Length=13014 Score = 152 bits (168), Expect = 6e-32 Identities = 185/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 84012 ATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGG 84071 || |||||||||||||| ||||| |||| | ||| ||||||||||| | ||||| Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 84072 TTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTG 84131 ||| ||||| || | | || ||||| || || ||||| | || || ||||| ||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 84132 CTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGG 84191 |||| ||| | ||| | |||||||| || || || ||||||||||| | ||| || || Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 84192 AGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGA 84251 | ||||||| |||||||| ||||| |||||||| | || || || || || ||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 84252 GCAGCAACAATA 84263 ||||| || ||| Sbjct 5970 GCAGCTACGATA 5959 >seq1209 Length=37697 Score = 122 bits (134), Expect = 1e-22 Identities = 176/246 (72%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 84091 TCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAA 84150 |||| ||||| || | ||||||| || || | ||| ||||||| ||| | ||| | | Sbjct 32710 TCTG-TTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGA 32652 Query 84151 ACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGA 84210 |||| || | || | ||||||||||| ||| || || | |||| || ||||||| Sbjct 32651 ACCAGATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGA 32592 Query 84211 AGGA--AGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATA 84268 | | |||||| |||||||| | || || || || || |||||||| || |||| | | Sbjct 32591 AACATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGA 32532 Query 84269 AGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTC 84328 |||||| || ||||||||||| | ||||| | || || |||||||| | ||||| Sbjct 32531 AGTTTCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTC 32472 Query 84329 TCGGAT 84334 | ||| Sbjct 32471 CCTGAT 32466 >seq16876 Length=31318 Score = 107 bits (118), Expect = 2e-18 Identities = 172/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||| ||||||| ||| | |||| Sbjct 28299 GGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTACCAAGATTAGCATGGTTAATA 28240 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| | |||||||| | ||| | ||| ||||| || | | || ||||| || Sbjct 28239 ATATCTGGCCAGGTATGAATTACATGACCTTGACTATCAACTACAAATTGGTTGAAATTT 28180 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 | | ||| | || || ||||| ||||||| ||| | ||| | ||| | || | Sbjct 28179 CAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCTGTGAACTA----CCTATT 28124 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGA--AGCATACT 84222 || ||||||||||| | ||| || || | |||||| |||||||| | |||||| | Sbjct 28123 ACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAGTTGTTGAAACACTAGCATATT 28064 Query 84223 GGAAGA 84228 |||||| Sbjct 28063 GGAAGA 28058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570986192251840