Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq29839 223 4e-53 seq9269 123 3e-23 >seq29839 Length=13537 Score = 223 bits (246), Expect = 4e-53 Identities = 579/874 (66%), Gaps = 13/874 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || |||||||| | |||||||| |||||||||||||| || |||| || || || | Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||||| |||||||| ||||| |||| || || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | ||||| || ||||||| || ||| | |||||| || | ||||||||| | | Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || || | ||||| | |||||| |||||||| || ||||||| || ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 18910 GATACAACTCTATCTTCATT-AGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 |||| ||| ||| | | | || | | | ||| |||||| ||||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAA-TGAATACAACAAACAAGCAAA 4846 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||||||| || || || |||| ||||| || || || || ||||| |||||||| Sbjct 4845 ATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCAT 4786 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCTT 19087 | || | |||||| |||||||| || || ||| | | || || ||||| || || | Sbjct 4785 TAACCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAACTACCTGAGAAGAAAATTCCCT 4727 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| || | | | || | ||| | || | ||| |||||| | Sbjct 4726 CAACACAGGCAAACGCCAAAATACGCTCGGCG-AACGAT--TCCGTGCTATCAATCCACT 4670 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA--- 19204 | | ||||||||||||||||| || ||||| || | || || |||| | || | Sbjct 4669 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACC 4610 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||| | | ||| | || || ||| | ||| | || | | | ||||||||| || | Sbjct 4609 GATTCTT---CTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGG 4553 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| || || || || || || || ||||| || ||| ||| ||||| | | || | Sbjct 4552 AATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGA 4493 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | || | | || | | ||| || ||| || |||||| ||| || || | Sbjct 4492 CTTCTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGA 4433 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAA 19444 | || | ||||| | || |||||||| || || || ||||| | | ||| | || Sbjct 4432 AGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGATTCCCAGTGGCGAA 4373 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 |||| || | ||| ||||| || | ||||| || || || || ||||| || |||| Sbjct 4372 GGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACA 4313 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATAT 19538 | | ||| || | | |||| || || || || || Sbjct 4312 TCTCCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||||| ||||||| || |||| | | ||| || ||||| || Sbjct 7941 ACCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCC 7882 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||||||||| || | || | ||||| || || Sbjct 7881 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGGA 7822 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| |||||||| || || || | |||||| ||| | ||||||||| || Sbjct 7821 AACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATAT 7762 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 |||||||||||||||||| |||| || || ||||| ||| Sbjct 7761 TCCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561826003062720