Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq8682 120 9e-23 seq16876 95.1 4e-15 seq1209 89.7 2e-13 seq3977 84.2 7e-12 >seq8682 Length=13014 Score = 120 bits (132), Expect = 9e-23 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 36012 ATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTT 36071 ||||||||||| || | | |||||||||| ||| |||||||| || | || | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 36072 CCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131 || | |||||| || || || ||||| || || || || | || |||||||||||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 36132 GAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGT 36191 | || | |||||| | ||| || | || ||||||||||| |||||||||||| Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 36192 AAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGA 36251 ||| || || || || || ||||| |||||||| | || ||||| || |||||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 36252 GCCGCAACAAT 36262 || || || || Sbjct 5970 GCAGCTACGAT 5960 >seq16876 Length=31318 Score = 95.1 bits (104), Expect = 4e-15 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| ||| |||||||| || |||||||| || || ||||| ||||||||||||||| | Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | | ||| |||||| ||| || | ||| || | | || || | |||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || | || ||||| || | | || | || |||||||||||| | || | | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || || | | | | | || ||||||||||| ||||| ||||||||| ||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 36204 TTATT--AAAGCTAGCATACTGGAAGA 36228 || || || |||||||| ||||||| Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGA 28058 >seq1209 Length=37697 Score = 89.7 bits (98), Expect = 2e-13 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 36096 TTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCAT 36155 ||||| || | || || | || |||| ||||||| | || | |||||| | ||| Sbjct 32706 TTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCAG 32647 Query 36156 ATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGC-- 36213 || | | ||||||||||| |||||||||||||| | || || || | Sbjct 32646 ATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACAT 32587 Query 36214 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCT 36273 ||||||| |||||||| | || ||||| || |||||||| || || || | | | || | Sbjct 32586 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTTT 32527 Query 36274 CTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314 |||| ||||| |||||| |||| || | || ||||||| Sbjct 32526 CTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCA 32486 >seq3977 Length=13071 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| ||||||||||||||||| || | Sbjct 86 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 27 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCC 36054 | |||||||| | ||| |||| || Sbjct 26 ATTAGCACGGTTTATAATATCAGACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150382491071792