Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq8682 132 1e-26 seq1209 111 5e-20 seq3977 89.7 2e-13 >seq8682 Length=13014 Score = 132 bits (146), Expect = 1e-26 Identities = 180/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 5234 ATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTA 5293 || |||||||||||||| || |||||||| | | ||| ||||| || || | | | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 5294 CCGCTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTG 5353 || | ||||| || || || ||||| || || || || | || |||||||||||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 5354 GAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGT 5413 || || | || ||| | ||| || | || || ||||||| ||| |||||||||||| Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 5414 AAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGA 5473 ||| ||| ||||| || || ||||| |||||||| | || ||||| || |||||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 5474 GCCGCAACAAT 5484 || || || || Sbjct 5970 GCAGCTACGAT 5960 >seq1209 Length=37697 Score = 111 bits (122), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 5318 TTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCAT 5377 ||||| || | || || | || |||| ||||||| || || | || ||| | ||| Sbjct 32706 TTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCAG 32647 Query 5378 ATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGC-- 5435 || | || | ||||||| ||| |||||||||||||| | | ||||| || | Sbjct 32646 ATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACAT 32587 Query 5436 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTT 5495 ||||||| |||||||| | || ||||| || |||||||| || || || | | | |||| Sbjct 32586 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTTT 32527 Query 5496 CTTCCTCTTGGCCGAATTTATATCC 5520 |||||||||| |||||| |||| || Sbjct 32526 CTTCCTCTTGACCGAATCTATAACC 32502 >seq3977 Length=13071 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 86 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 27 Query 5251 GTTGGCACGGTT 5262 || |||||||| Sbjct 26 ATTAGCACGGTT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152576641886928