Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq8682 123 8e-24 seq16876 100 9e-17 seq1209 95.1 4e-15 seq3977 80.6 8e-11 >seq8682 Length=13014 Score = 123 bits (136), Expect = 8e-24 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 25492 ATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTT 25551 ||||||||||| || | | |||||||||| ||| |||||||| || | || | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 25552 CCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611 || | |||||| || || || ||||| || || || || | || |||||||||||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 25612 GAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGT 25671 | || | |||||| | ||| || | || ||||||||||| |||||||||||| Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 25672 AAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGA 25731 ||| ||| || || || || ||||| |||||||| | || ||||| || |||||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 25732 GCCGCAACAAT 25742 || || || || Sbjct 5970 GCAGCTACGAT 5960 >seq16876 Length=31318 Score = 100 bits (110), Expect = 9e-17 Identities = 183/267 (69%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| ||||||||||| || || ||||| ||||||||||||||| | Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | | ||| |||||| ||| || | ||| || | | || || | |||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || | || ||||| || | | || | || |||||||||||| | || | | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || || | | | | | || ||||||||||| ||||| ||||||||| |||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 25684 TTATT--AAAGCTAGCATACTGGAAGA 25708 || || || |||||||| ||||||| Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGA 28058 >seq1209 Length=37697 Score = 95.1 bits (104), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 25576 TTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCAT 25635 ||||| || | || || | || |||| ||||||| | || | |||||| | ||| Sbjct 32706 TTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCAG 32647 Query 25636 ATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGC-- 25693 || | | ||||||||||| |||||||||||||| | | || || || | Sbjct 32646 ATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACAT 32587 Query 25694 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCT 25753 ||||||| |||||||| | || ||||| || |||||||| || || || | | | || | Sbjct 32586 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTTT 32527 Query 25754 CTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794 |||| ||||| |||||| |||| || | || ||||||| Sbjct 32526 CTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCA 32486 >seq3977 Length=13071 Score = 80.6 bits (88), Expect = 8e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| ||||||||||||||||| || | | Sbjct 82 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 23 Query 25513 GCACGGTTAAGAATGTCAGCCC 25534 |||||||| | ||| |||| || Sbjct 22 GCACGGTTTATAATATCAGACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151920955418848