Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq29839 131 2e-25 >seq29839 Length=13537 Score = 131 bits (144), Expect = 2e-25 Identities = 349/530 (66%), Gaps = 5/530 (1%) Strand=Plus/Minus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| ||||| |||||||||||||| | |||||||||| ||||| || || || | Sbjct 4861 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGA 4802 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCA 37286 | |||||||| |||||||| || | |||||| | ||| || | || ||| ||| || Sbjct 4801 ACGTTAATCCAGGCATTAACCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAACTACCT 4743 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || |||||||| || ||||| ||||| || | || ||| |||| | | | Sbjct 4742 GAGAAGAAAATTCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGATTCCGTG 4683 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 ||| |||||| ||| | |||||| ||||| || ||||| | |||||| Sbjct 4682 CTATC---AATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCA 4626 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || | || || || | || | | ||||| || |||| || | | Sbjct 4625 ATAGCACGGAACAACCGATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGA 4566 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||| || || || || || || || || || || || ||||| ||| |||||| Sbjct 4565 CTGTACATCTCGGAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCT 4506 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 |||| | ||| || || || | |||| || | || || ||| || |||||| Sbjct 4505 TCAGCAACTTGGACTTCTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCA 4446 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTT 37646 ||| || ||||| ||||| |||| | || |||||| | || ||| | ||| | Sbjct 4445 GAAGCAGCGAAGAAGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGAT 4386 Query 37647 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||| | || |||| ||| | ||| ||||| || | ||||| || Sbjct 4385 TCCCAGTGGCGAAGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAA 4336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592018805417920