Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq21318 165 6e-36 seq18711 156 3e-33 seq3045 122 7e-23 seq26478 102 6e-17 seq14089 95.1 1e-14 >seq21318 Length=12341 Score = 165 bits (182), Expect = 6e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || |||||||| || || |||||||||||||| | |||| | |||| || Sbjct 5220 ACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCATCCTCA 5279 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| ||||| || | | |||||| ||||| |||||||| |||||||||||| Sbjct 5280 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 5339 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| |||||| | || | ||||| || ||||||| || || |||| |||||| Sbjct 5340 ATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTG 5399 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||||| || || ||||| Sbjct 5400 CCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||| ||||||||||| || || |||||||| || || | ||||| | || || Sbjct 4991 AACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTC 5050 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||||| ||||| |||| | ||||||||| || || || || || || ||||| Sbjct 5051 AAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTG 5110 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| || ||| | || | || ||||| ||||||| |||||||| | ||||| Sbjct 5111 GATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTT 5170 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || |||||||| ||||| Sbjct 5171 GCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || || ||||| || || | ||| || | || |||| ||||||||| Sbjct 4548 GTTGATTCCTTCTGGATGTTGTAGTCTGCTAAAGTCCTACCGTCTTCCAGTTGCTTACCA 4607 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||||||||| | |||||| || || || || || ||||| ||||| || || ||| Sbjct 4608 GCAAATATCAATCTCTGTTGGTCAGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTC 4667 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | ||||| || |||| ||||| | |||| || || || ||||| || Sbjct 4668 ACATTGTCAATGGTGTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCCGTTAATGTC 4727 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 4728 TTCACGAAAATCTGCAT 4744 >seq18711 Length=80062 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | |||||| | || ||||| ||||| |||||||||||||| || ||||||| Sbjct 40150 TTCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGG 40091 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| |||| |||| || | ||||| || || || || | | ||| || || || | Sbjct 40090 CGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAG 40031 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||||||||| |||||||| |||||| | || | ||| ||||| |||| | Sbjct 40030 GAATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAA 39971 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || | ||||||||||| | |||||| || || || ||||| Sbjct 39970 CCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || || || || ||||| ||||| ||||| || ||||| Sbjct 40832 CCTCCACGAAGACGCAGCACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCT 40773 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| ||| |||| ||||||||||| || || || || || | |||||| || || || Sbjct 40772 AGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGG 40713 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || || ||| || | || | ||| || || | || ||| Sbjct 40712 ATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACT 40653 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 40652 TCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTGCAT 40606 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| | || ||||| || || || ||||| || || | ||| | | |||| || Sbjct 40358 ACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCCATCTTCA 40299 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| || || || | | ||| || || || || || || ||||||||||| Sbjct 40298 AGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTTATCTTGG 40239 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || ||||||| || | |||| ||||| Sbjct 40238 ATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGATGGTTTTA 40179 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||||| || || || ||||| Sbjct 40178 CCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || ||||| || ||||||||||| | || | |||| ||||| || Sbjct 41036 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGT 40977 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| | || || ||||| || || || || || || || ||||| Sbjct 40976 TTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTA 40917 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| || | || || || | || | || || || ||| Sbjct 40916 GCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTT 40857 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || ||||||||||| ||||| | | |||||| Sbjct 40856 AAGGTCTTTACAAATATTTGCATCCCTCCACGAAGA 40821 >seq3045 Length=115554 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| || || || ||||||||||| | |||| |||| ||||| || Sbjct 11519 ATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTG 11578 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 11579 CTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTT 11638 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | |||||| |||| ||||| ||||| |||| || || ||||| Sbjct 11639 GGCCTTCACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGT 11698 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 11699 AAGGGTCTTGACGAAGATTTGCATG 11723 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || |||||||| || | || || |||| || | |||| Sbjct 10836 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCTAGTTGC 10895 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || ||||| || || || || ||||||||| Sbjct 10896 TTTCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATTTTT 10955 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||||| | ||||| || | ||||| || || || || Sbjct 10956 GCCTTCACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCCGTC 11015 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 11016 AGGGTCTTAACAAAGATCTGCAT 11038 >seq26478 Length=75715 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || || || ||||| || || |||||||| ||||| Sbjct 13965 CCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCA 13906 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | ||||| || || || ||||||||||| || ||||| || Sbjct 13905 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGG 13846 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || ||| || ||| | || | || || || | || ||| Sbjct 13845 ATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACT 13786 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || || | || || || |||| ||||| || || ||||||||| || Sbjct 13785 TCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGATT 13735 >seq14089 Length=105206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || |||||||| ||||| ||||| || || |||||||| | |||| |||| Sbjct 70572 AAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAATCGGCAAGCGTTCGACCATCT 70631 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||||||||| ||||| || || | ||| || || || ||||| ||||| || || Sbjct 70632 TCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 70691 Query 101378 TGAAT 101382 || || Sbjct 70692 TGCAT 70696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396084016528536