Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq21318 118 8e-22 seq22339 102 6e-17 seq8166 91.5 1e-13 seq26478 84.2 2e-11 seq3045 84.2 2e-11 seq18711 82.4 6e-11 >seq21318 Length=12341 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| | ||| || |||||||| || ||||| | |||| | | |||| || Sbjct 4763 CACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCTAGAGTCCTGCCGTCTTC 4822 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | ||||||||| ||||| |||| | |||||| || | |||| ||||||||| || Sbjct 4823 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTG 4882 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| ||| ||| | | | | ||||| |||||| |||| || || ||||| Sbjct 4883 GATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCACTTCCAAGGTGATTGTTTT 4942 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| |||||||||||||| Sbjct 4943 GCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| ||||||||||| |||| | | | ||| | || ||||| || Sbjct 4086 TGGAGGGTGGACTCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGT 4145 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||||| ||||||||| | |||| ||||||||||| |||||| Sbjct 4146 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTC 4205 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | ||||| || || |||| || || || ||||| ||| Sbjct 4206 GCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTC 4265 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || || |||||||||||| Sbjct 4266 AGCGTCTTCACGAAAATCTGCATC 4289 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | |||||||| || || || || || |||||||| |||| ||| ||||| Sbjct 4983 AGCCGAAGAACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGA 5042 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||||||| ||||| ||||||| ||||||||| | || | |||||| Sbjct 5043 CCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCC 5102 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | || || |||||||| | ||| Sbjct 5103 TTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTA 5162 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || | || || ||||| || |||||| Sbjct 5163 ATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCATC 5201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || || ||||| || |||||||||| || | ||| Sbjct 4299 AGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCTAAAGTTCTG 4358 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| ||||| | ||| || || | || | |||||| Sbjct 4359 CCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCC 4418 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | || || || || || |||| || Sbjct 4419 TTGTCTTGAATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTG 4478 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || || || ||||||||||| Sbjct 4479 ATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 >seq22339 Length=139203 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||||| ||| | | | || |||| |||| Sbjct 89878 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGC 89937 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || ||||| | ||| || |||| || | ||| |||||||| ||| || Sbjct 89938 TTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTA 89997 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||||||| | | | | || || ||||||||||| || || || ||||| ||| Sbjct 89998 GCTTTTACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCGGTC 90057 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || ||||||||| Sbjct 90058 AAGGTTTTCACGAAGATCTGCATC 90081 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || || || |||||||||| || | ||| Sbjct 90319 AGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGA 90378 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || || ||||| ||||| || || |||| ||||| || | ||||| || ||| Sbjct 90379 CCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCC 90438 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | | || || | || ||||| | || Sbjct 90439 TTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTG 90498 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| || || || ||||||||||| Sbjct 90499 ATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq8166 Length=147256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || || | ||| |||||| ||| || || || ||||| || | || ||||| Sbjct 120230 AGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 120289 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||||||||| || || || ||||| || |||| || | |||||| Sbjct 120290 CCATCCTCCAGCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 120349 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | | || || ||| ||||| | || Sbjct 120350 TTGTCCTGAATCTTTGCCTTAACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 120409 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || || |||||||| Sbjct 120410 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 120447 >seq26478 Length=75715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| ||||| || || | ||| | || |||||| || || || |||||||| || | Sbjct 13967 CGCCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGG 13908 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || |||| |||| || | |||||| ||||| || |||| ||||| || || | || Sbjct 13907 CAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGG 13848 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| |||||| || ||| | | | || || ||| | Sbjct 13847 GGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTCTCGA 13788 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | ||||| || || ||||| | ||||| || || |||||||| Sbjct 13787 CTTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq3045 Length=115554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || || ||||| |||||||| | || |||| | || |||||||| Sbjct 11519 ATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTG 11578 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||||||||||| || ||| || || | ||| | || ||||| || ||||| Sbjct 11579 CTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTT 11638 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | || || |||| ||||||||| | || || || ||||| || Sbjct 11639 GGCCTTCACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGT 11698 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || || || || ||||| Sbjct 11699 AAGGGTCTTGACGAAGATTTGCAT 11722 >seq18711 Length=80062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | || || ||| ||| |||||||||||||| || | ||| | || Sbjct 40595 AGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGT 40536 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || |||| | || || |||| ||||| || || Sbjct 40535 CCATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCT 40476 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | ||||| || ||||| | ||| Sbjct 40475 TTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTA 40416 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | ||||| |||||||| ||||| Sbjct 40415 ATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCAT 40378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380750741536104