Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq8682 176 5e-39 seq16876 143 3e-29 seq1209 136 4e-27 seq3977 86.0 7e-12 >seq8682 Length=13014 Score = 176 bits (194), Expect = 5e-39 Identities = 192/254 (76%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 163192 ATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAAC 163251 || || ||||||||||| || ||||| || ||||||||||| |||||| |||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCA 163311 || ||||| | || |||||||| ||||| | ||||| || | || |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 163312 ATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTT 163371 | ||| | |||||||| |||||| | || |||||||| ||||||||||| || ||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 163372 GA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT 163428 || |||| || || ||| ||| ||||| ||||| ||||| | || ||| Sbjct 6140 GATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTT 6196 Query 163429 GGTATGGAAGTTAT 163442 |||||||||||||| Sbjct 6197 GGTATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 143 bits (158), Expect = 3e-29 Identities = 200/279 (72%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 163214 TTGGTCGCTTGATCTTCCAGTATGCA--TCTTTCAACAACTCACGTTCACTTCACTTCTT 163271 |||| || ||| ||||||| ||||| | |||||||||||| ||||| | || || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 163272 CCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGC 163331 ||| ||||| | ||||| | | | |||||| || | ||| | |||||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 163332 ATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGAT 163391 |||||| | || ||| || |||||||||| || ||||| ||| | || || Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 163392 TCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCG 163451 || ||| ||| ||||||| ||||| || ||||||| |||||||||||| || || Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 163452 TAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||| || |||||||| || ||||| ||| ||| ||| Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 136 bits (150), Expect = 4e-27 Identities = 184/254 (72%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 163108 ACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTC 163167 |||||| | ||||||| ||||| | || | || || || | ||||||| ||| Sbjct 32455 ACTTCTAGT-TTATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTC 32513 Query 163168 GGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATC 163227 || ||||| ||||| |||| | || || ||||||||||| || ||||| || |||||| Sbjct 32514 GGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 32573 Query 163228 TTCCAGTATGC--ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCC 163285 ||||| ||||| || |||||||||||| | ||| | || ||||||| ||||| | | Sbjct 32574 TTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGC 32633 Query 163286 CTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACG 163345 ||| || | ||||||||||| || | ||| | |||||| | |||||| | || | Sbjct 32634 CTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATG 32693 Query 163346 GTTTCAACTTCAAC 163359 ||| || |||||| Sbjct 32694 GTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 163426 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||||||||||||||| || |||||||||||||||||||| || ||||| |||||| Sbjct 27 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552806543037120