Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq8682 168 8e-37 seq7398 163 3e-35 seq16876 127 2e-24 seq1209 102 9e-17 seq11821 91.5 2e-13 seq13736 84.2 2e-11 >seq8682 Length=13014 Score = 168 bits (186), Expect = 8e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 163585 ATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163644 ||||| || || ||||| || || || || |||||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 163645 AGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCA 163704 | | | || |||||||| || || |||||||| || || || ||||| || || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 163705 CTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTT 163764 | || | ||||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 163765 GATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGT 163824 ||| |||| |||||||| | || || ||||| || | ||||||| ||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 163825 ATGGAAGTTAT 163835 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 163 bits (180), Expect = 3e-35 Identities = 221/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 165228 TTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAA 165287 |||| ||||||| || |||||||| || | || ||| | | || || | ||| Sbjct 2173 TTATTTGAGGATGAGGATGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAA 2232 Query 165288 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTT 165347 || |||||||| |||||||||||||||||||| ||||| | ||||| || |||| ||| Sbjct 2233 GAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTT 2292 Query 165348 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACA 165407 || || || || ||| | ||||| || ||||| ||||| || || | ||| | |||| Sbjct 2293 TCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATG 2352 Query 165408 TCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 165467 || |||| | ||||| | | | ||||| ||||| || || ||||| |||| Sbjct 2353 AGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAG 2412 Query 165468 GAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTG 165527 || || | | ||| |||||||| |||||||||| ||||| |||||||| || || || Sbjct 2413 GAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTA 2472 Query 165528 AATGAAGG 165535 || |||| Sbjct 2473 AACAAAGG 2480 >seq16876 Length=31318 Score = 127 bits (140), Expect = 2e-24 Identities = 195/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 163609 GGTCGTTTGATCTTCCAATATGCA--TCATTCAACAACAGCAGAAGTCTTCACTTCTTCC 163666 || || ||| ||||||||||||| | ||||||||| | | | | || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 163667 TGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCAT 163726 | || || |||||||| | || | ||| || || | || | ||||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 163727 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCA 163786 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 163787 ACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTA 163846 | || ||| |||| | |||||| ||| ||| |||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 163847 ACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 | || || |||||||| || || || ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 102 bits (112), Expect = 9e-17 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 163608 ||||| | || |||||||| ||||| || | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 163609 GGTCGTTTGATCTTCCAATATGC--ATCATTCAACAACAGCAGAAGTCTT--CACTTCTT 163664 || || ||||||||||||||||| || ||||||||| | |||| || ||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAAC--TCTCATTCTTTACATTTCTT 32619 Query 163665 CCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGC 163724 || || || ||||||| || | |||||||| || || | || | ||||| ||| | Sbjct 32620 CCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGAC 32679 Query 163725 ATTCAACCTCAACGGTTTCAACTTCAAC 163752 |||||| | || |||| || |||||| Sbjct 32680 TTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq11821 Length=47813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 |||||||| ||| |||| || || || ||| | ||| | ||||||||| | ||||| Sbjct 4320 TACATTCTCGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGAGCTGGG 4261 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 |||||||| | ||||| ||| || | || || || || || || ||| || ||| Sbjct 4260 GCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCGGGGACAGTGGACCAGTCAGACGGATCA 4201 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTC-GTGCTTACGTGTGTAGCATATCCAAC 164241 ||| | ||||| | ||||| | || ||| | || || || || || ||||||||| Sbjct 4200 TTCTTGGACGACAAGCAGATGG-AGAAGGGGTATGTCCTGACCTGCGTTGCATATCCACA 4142 Query 164242 ATCTGATTGTGT 164253 |||||||||||| Sbjct 4141 ATCTGATTGTGT 4130 >seq13736 Length=68382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 164054 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 164113 || ||| |||||||||||| |||||| || ||| ||||| || |||||| || Sbjct 10051 GATGATGTATACATTCTAGATCAAGCAGAGGATTTGGGAATTGATCTTCCTTACTCATGC 9992 Query 164114 CGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 164173 | || || ||||||| || |||||||| ||| | ||||| || | || |||||| Sbjct 9991 AGGGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCA 9932 Query 164174 GAT--CAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAG 164231 ||| ||| ||||| || ||||||||| || || ||| | || | || ||||| | Sbjct 9931 GATGGCAG--CTTCCTTGATGATGATCAGGCTGAAGAAGGTTGGGTTTTAACTTGTGTTG 9874 Query 164232 CATATCC 164238 | ||||| Sbjct 9873 CTTATCC 9867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562926249250240