Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq7398 178 1e-39 seq8682 159 4e-34 seq1209 123 3e-23 seq3112 96.9 4e-15 seq16876 95.1 1e-14 >seq7398 Length=4807 Score = 178 bits (196), Expect = 1e-39 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 10457 GCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 10516 ||||| || ||| | |||||| | ||||||| ||||| || ||||| ||||| ||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 10517 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 10576 || ||||| || |||||| | || ||||| |||||||| ||||||||| ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 10577 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGT 10636 ||||||||| | |||||||| || | ||| | |||| | || ||||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 10637 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGAT 10696 | | | || || ||||| || || || || ||||| || || | | | |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 10697 CCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGT 10744 ||| |||||||||| |||||||| || ||||| || | ||| ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq8682 Length=13014 Score = 159 bits (176), Expect = 4e-34 Identities = 186/251 (74%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 8941 ATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAAT 9000 || || || |||||||| || ||||| || |||||||||||||||||| ||| ||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 9001 TCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCC 9060 ||| | || ||||||||||| ||||| |||||||| || || || ||||| ||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 9061 CTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATC 9120 | || | || |||||||||||| | ||||| ||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 9121 GACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGT 9180 || | ||||| || || | || |||||||| || | ||||||| || || ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 9181 ATGGAAGTCAT 9191 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 123 bits (136), Expect = 3e-23 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 8914 TTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTG 8973 ||||||||||| || ||||||| | || || || |||||||| || ||||| || ||| Sbjct 32511 TTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 32570 Query 8974 ATCTTCCAATATGC--ATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGT 9031 |||||||||||||| || ||| ||||| ||| || |||||||||| ||||| | Sbjct 32571 ATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTT 32630 Query 9032 GGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCA 9091 |||||| || | |||||||| ||||| | || | || ||| |||||||| | | Sbjct 32631 GGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGA 32690 Query 9092 ATGGCTTCAACTTCAAC 9108 |||| | || |||||| Sbjct 32691 ATGGTTGAAATTTCAAC 32707 >seq3112 Length=30994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 10109 TTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTG 10168 || || || |||||| | | ||| |||| | || |||||||| || ||||| || Sbjct 6877 TTGGTTGCTCTCCACAGTACTTTCAGACTAATAAGTTTCATGTTACGTCAATTTGAACTT 6936 Query 10169 GCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTT 10228 | | || || | | |||||||| ||||| ||||| || || || || |||| |||| Sbjct 6937 CCTCGGTTTGTTCAACTGCGACCTTATAATGCCATCGCATTCTCGGGCCCAATTGTTGTT 6996 Query 10229 TTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGT 10288 ||| | | | ||| | || | || ||| || | |||| |||||||||||| ||| ||| Sbjct 6997 TTTATTTCTATGTTCATGATTTCTCTACTAGGTCCGTCTGGTTGGTTCTTTGTGCCTAGT 7056 Query 10289 TTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTG 10344 || || | | || | || | ||| | ||||| |||| || |||||||||| Sbjct 7057 TTTGGTATAGTAGCTGTATTTCAATTCATCCTCTTTTTCCAAGGGATTCATAATTG 7112 >seq16876 Length=31318 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 8963 TTGGTCGCTTGATCTTCCAATATGCA--TCTTTTAACAATTCTAGAAGCTTGCATTTCTT 9020 |||| || ||| ||||||||||||| | ||| ||||| || | || ||||| || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 9021 CCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGC 9080 ||| ||||| |||||||| | || | ||| || || | || | || ||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 9081 TTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCT 9140 ||||||| | ||| | | || |||||||| | | | || | ||||| | || | Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 9141 CAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAG 9200 | |||||| |||| | |||||| || || |||| |||||| ||||| ||| | Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 9201 AAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 || || || |||||||| || ||||| || ||| ||| Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516220158912000