Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq8682 196 5e-45 seq16876 178 1e-39 seq7398 163 3e-35 seq1209 134 2e-26 seq3977 89.7 6e-13 seq14314 86.0 7e-12 seq3485 86.0 7e-12 seq18495 82.4 8e-11 >seq8682 Length=13014 Score = 196 bits (216), Expect = 5e-45 Identities = 194/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 161569 ATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAAC 161628 ||||| ||||| || || || || || || |||| |||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 161629 TCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCA 161688 || || || | || |||||||| |||||||||||||| || || || |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 161689 CTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTT 161748 | || | ||||| ||||| |||||| | ||||||||||| |||||||| ||| | ||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 161749 GATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGC 161808 |||||||| ||| || || || |||||||| || || | ||||||||| |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 161809 ATGGAAGTGAT 161819 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 178 bits (196), Expect = 1e-39 Identities = 199/265 (75%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 161605 TTCCAATACGCT--TCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGC 161662 |||||||| ||| | |||||||||||||| || | || || ||||| |||||||||| Sbjct 28060 TTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTGGC 28119 Query 161663 CTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATG 161722 |||| | || | |||||| || | || | ||||| ||||| |||||| | ||| Sbjct 28120 CTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATT 28175 Query 161723 GTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAG 161782 ||| || |||||||| | | | ||||||||||| ||| | || || | |||||| ||| Sbjct 28176 GTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCCAG 28235 Query 161783 ACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACT 161842 | || | |||| |||| |||||| | |||||| ||||| || || ||||| || |||| Sbjct 28236 ATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAACT 28295 Query 161843 TCCCTCTTGACCTTGCTGCTGCTGA 161867 ||||||| ||||| ||| ||| ||| Sbjct 28296 TCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 163 bits (180), Expect = 3e-35 Identities = 201/275 (73%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 162759 GCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACT 162818 ||||| || || | || ||| || | || || | |||||||| ||||| ||||| ||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 162819 GCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCAT 162878 || |||||||| ||||| | || || || |||||||| || || |||||||| ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 162879 TTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGA 162938 ||||||||| | ||||| || || | ||| | |||| ||| || | || | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 162939 CTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGAC 162998 | | | || || ||||| || ||||| || ||||| ||| |||||| || ||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 162999 CCTGAGTTTGAGACGTTCTATACAAAGAACATTCT 163033 ||| | |||||||| |||||||| || || ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 161503 GAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 161562 ||||||| ||||| || || || | ||||| | ||||||||||| ||||| || Sbjct 32472 GAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACT 32531 Query 161563 TACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCT--TCCT 161620 | | ||||| ||||| || || || || || || |||| |||||||| ||| | | Sbjct 32532 TCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTT 32591 Query 161621 TCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGT 161680 |||||||||| | || | || ||||||| ||||||||||||| || | ||||||| Sbjct 32592 TCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGT 32651 Query 161681 TCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAAC 161736 |||| || | || | ||||| ||| | |||||| ||||||||| || |||||| Sbjct 32652 TCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 161791 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTT 161850 ||||||||| |||||| |||||||| ||||| || || |||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 161851 GACCTTGCTGCT 161862 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq14314 Length=96451 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 161659 TGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTG 161718 |||||||| || || ||||||||||| || | || | ||||| ||| | |||||| | Sbjct 62565 TGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGTCTTTCAACTTA 62624 Query 161719 AATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGG 161778 ||| ||| || |||||||| ||| | ||||||||||| ||| | || || | | |||| Sbjct 62625 AAT-GTTAAAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCATGTAATTCATAACTGG 62683 Query 161779 GCAGACGTTCTCAACCGTGCTGGTCTTGG 161807 | || || | |||| |||| | |||| Sbjct 62684 ACGGATATTATTAACCATGCTAATTTTGG 62712 >seq3485 Length=85743 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 162144 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 162203 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| || Sbjct 21362 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTT 21421 Query 162204 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 162263 || | || |||||| |||| || || || || || || |||||||| || ||| | Sbjct 21422 GCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 21481 Query 162264 GCGAGTTCCTATCTTGAGGG 162283 || ||||||||| | || || Sbjct 21482 GCAAGTTCCTATTTGGAAGG 21501 >seq18495 Length=8931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 8825 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 8766 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 8765 CCTGTCATCCCTACCTAT 8748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547471628383680