Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq8682 109 2e-19 seq1209 89.7 2e-13 seq16876 87.8 5e-13 seq13547 80.6 8e-11 >seq8682 Length=13014 Score = 109 bits (120), Expect = 2e-19 Identities = 178/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 17874 ATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGT 17933 |||||||| | ||||| ||||| | ||| | | |||||||| ||| | || | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 17934 CCT---CCAGCTGCTACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATA 17990 ||| | | | ||||| ||||||||||| ||||| ||||| | || ||||||||| Sbjct 6150 CCTTGACTATCAACTACA---GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATA 6094 Query 17991 GTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAA 18050 ||| || || | || ||| | ||| || | || ||||||||||| | ||||||| Sbjct 6093 GTGCTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAA 6034 Query 18051 TGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCA 18110 |||| | | ||||| || || ||||| |||||||| | || ||||| || ||| Sbjct 6033 TGTAAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCA 5974 Query 18111 TGAGCCGCAACAATA 18125 ||||| || || ||| Sbjct 5973 TGAGCAGCTACGATA 5959 >seq1209 Length=37697 Score = 89.7 bits (98), Expect = 2e-13 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 17957 GTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCA 18016 |||||| || | ||||| | || |||| ||||||| || || | || ||| | ||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 18017 TATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGTTAAAGC 18075 || | | ||||||||||| ||||||||||| | || | ||||| || | Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTA-AAGAATGAGAGTTGTTGAAAC 32589 Query 18076 --TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 ||||||| |||||||| | || ||||| || |||||||| || || |||| | | || Sbjct 32588 ATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGT 32529 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||| ||||| || ||| |||| || | || ||| ||| || | ||||| || Sbjct 32528 TTCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTCCCT 32469 Query 18194 AATAA 18198 |||| Sbjct 32468 GATAA 32464 >seq16876 Length=31318 Score = 87.8 bits (96), Expect = 5e-13 Identities = 178/262 (68%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| || |||||||| || ||||||||||| ||||| || Sbjct 28312 AGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTACCAAGATT 28253 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| ||| | | || | ||| ||| | | || || ||| | | | |||||| Sbjct 28252 AGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCAACTACAA- 28194 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||||| || | | ||| | || |||||||||||| || || | || || Sbjct 28193 --ATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCTGT 28136 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | | | | | || ||||||||||| | ||| ||||||| | | | ||||| Sbjct 28135 GAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAGTTGTT 28080 Query 18071 --AAAGCTAGCATACTGGAAGA 18090 || |||||||| ||||||| Sbjct 28079 GAAACACTAGCATATTGGAAGA 28058 >seq13547 Length=78248 Score = 80.6 bits (88), Expect = 8e-11 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 18568 CAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCC 18627 || ||| || ||||| || ||||| | |||||| || |||| || ||| ||| | Sbjct 5365 CAACTTTTCAAATTGGATAAAAGTGCAAACCGATAGCTGTAGAA-ACAGGAATATTAGCA 5423 Query 18628 CT-GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCT 18686 || || || || ||||||||||| | || | ||| || ||| || ||||||| | Sbjct 5424 CTAGAAATAATATTGTTTCCATAAACTAGAGTTCCAGAAACATATCTACAAATACCACCA 5483 Query 18687 ATGTCAACGGGAGGAGCAGCAACAAATGCAATCAA-AAATGCTGTAGCTGCGGTTAAAAG 18745 || || || || ||| || || || ||||| || |||| | | || ||| | ||| | Sbjct 5484 ATATCTACTAGATGAGTAGTAATGAAGGCAATTAATAAATACAGAAGTTGCAGCTAATAA 5543 Query 18746 TGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 | |||||| || | || |||||||| || | |||||| |||| Sbjct 5544 GGTAGGGATTATTAAAACACCAAACCATCCAATGTAGAGATGGTT 5588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151246078127312