Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq7398 156 5e-33 seq8682 145 1e-29 seq1209 100 4e-16 seq3112 89.7 7e-13 seq33924 86.0 8e-12 seq11821 82.4 1e-10 >seq7398 Length=4807 Score = 156 bits (172), Expect = 5e-33 Identities = 217/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 101793 ACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGC 101852 ||||| || || || || || || || ||||| ||||| || | |||||||| ||| | Sbjct 2481 ACCTTTGTTTAAGAGAATATTTTTGGTATAGAAAGTCTCAAATTTAGGATCTTCCGCTAC 2422 Query 101853 TCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACC 101912 | || || || || || |||||||| ||||| ||||| | | | ||||| | || Sbjct 2421 ACGAATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTAAAGCCCAAACCAACTACTCC 2362 Query 101913 GATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCT 101972 | | ||| |||| | ||| | || || ||||| | |||||||||||| ||||| | Sbjct 2361 AAGAGCACTCATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACG 2302 Query 101973 CTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGA 102032 ||||| ||| |||| |||||||||| ||||| || |||||||| || |||||||| Sbjct 2301 TTTATTGGAAAAAGCAACCCCAAAGATTTCGGACCAAAAGCGGTTTGCAGTGACCATTGA 2242 Query 102033 ATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATC 102092 |||||| ||||| |||| || | | || || | ||| || ||||| ||| |||| Sbjct 2241 ATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCATGGAATGTATTTGCACCATCCTCATC 2182 Query 102093 TTCA 102096 ||| Sbjct 2181 CTCA 2178 >seq8682 Length=13014 Score = 145 bits (160), Expect = 1e-29 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 103214 ATGACTTCCATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGA 103273 || ||||||||||| ||| ||| ||||| | || || |||||||| || | |||||| Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 103274 CCCTGACCATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTG 103333 || |||| ||||| | || |||||||| ||||| || || | |||||| ||||| ||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 103334 CTAACACCAAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNN 103393 |||| ||| | ||||||||||| ||||| ||||| || Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 103394 NNNNNNNGGGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGA 103453 | ||||||||||| ||| |||||||||||||| || || || ||||||||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 103454 GCGGCTACGAT 103464 || |||||||| Sbjct 5970 GCAGCTACGAT 5960 >seq1209 Length=37697 Score = 100 bits (110), Expect = 4e-16 Identities = 153/227 (67%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 103297 GTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCA 103356 |||||| || | || |||| |||||| | ||| ||||||| ||| | ||||||||||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 103357 GATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGA 103416 ||||| ||| | || | ||||||||||| | Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACA 32588 Query 103417 T--GCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTC 103474 | || |||||||||||||| || || || ||||||||||| |||||||| | | || Sbjct 32587 TTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTT 32528 Query 103475 TCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 ||||||||||| ||||| | ||||| | || ||||||| |||| Sbjct 32527 TCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTC 32481 >seq3112 Length=30994 Score = 89.7 bits (98), Expect = 7e-13 Identities = 174/256 (68%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 102173 TATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATA 102232 |||| |||||||| | || | ||||| | || || | ||||| | |||| ||||| Sbjct 7131 TATGAAATGGGTTCAATATCAA-TTATGAATCCCTTGGAAAAAGAGGATGAATTGAAATA 7073 Query 102233 TCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGA 102292 ||| | | |||||| ||| |||||||||||| ||| | || || || | || | Sbjct 7072 CAGCTACTATACCAAAACTAGGCACAAAGAACCAACCAGACGGACCTAGTAGAGAAATCA 7013 Query 102293 GAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAA 102352 |||| | | ||||||| | || || || ||||| || || ||||| || || || | Sbjct 7012 TGAACATAGAAATAAAAACAACAATTGGGCCCGAGAATGCGATGGCATTATAAGGTCGCA 6953 Query 102353 TTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCAC 102412 | || |||| || | || |||||||| | |||||||| || || || | || Sbjct 6952 GTTGAACAAACCGAGGAAGTTCAAATTGACGTAACATGAAACTTATTAGTCTGAAAGTAC 6893 Query 102413 CGTGGAGAGCCACAAA 102428 ||||||||| || || Sbjct 6892 TGTGGAGAGCAACCAA 6877 >seq33924 Length=56609 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGT 102869 |||| |||| ||||| ||| |||||||| | | | |||| || | | |||| | Sbjct 49875 CACAGTCCGCCGTTGGTAATGAAACGCAGGTTAACAAATAACCCTCTGCCATTTGACTAT 49934 Query 102870 CATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAG 102929 |||| || || || || ||||| || | |||||| | || || || || || | Sbjct 49935 CATCAAGGAACGACCCGTCCGACTGATCAACTGAACCCGAAACCATTTTCCCGGCGCACG 49994 Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989 |||||||||| || || | || |||||||| | ||||| |||||||| ||||| || | Sbjct 49995 TAGAACACGCGCCTGCCCTGCAAGAATAAGGTAAGTCAACTCCTGCTTCTTCAGCTGCAT 50054 Query 102990 CTAGAATATATTGATCATC 103008 | ||||| || |||||| Sbjct 50055 CAAGAATGTAAGTATCATC 50073 >seq11821 Length=47813 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 102823 TGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCATCCAGAAAG 102880 ||| ||||| ||||||||||| ||| | || ||||| | || | ||| |||| || Sbjct 4144 TGGATATGCAACGCAGGTCAGGACATACCC--CTTCTCCATCTGCTTGTCGTCCAAGAAT 4201 Query 102881 GATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCA 102940 ||| ||| || || || || ||||| | | | ||| ||||||||||| || || Sbjct 4202 GATCCGTCTGACTGGTCCACTGTCCCCGAAACTACTTGACCGGCACAAGTAGAGCAAGCC 4261 Query 102941 CCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATAT 103000 ||||| | || || ||||| ||||| | || || || ||||| | ||| ||||| || Sbjct 4262 CCAGCTCTGCAAGAGTAAGGTAGATCCAATCCAGCATCCTCAGCTGAGTCGAGAATGTAA 4321 Query 103001 TGATCATC 103008 |||||| Sbjct 4322 GCATCATC 4329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633194879307840