Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq8682 176 1e-39 seq1209 125 2e-24 seq16876 120 9e-23 >seq8682 Length=13014 Score = 176 bits (194), Expect = 1e-39 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 ||||| || |||||||||| ||| ||||||||||| || || || | || | | | | Sbjct 6198 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 6139 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | ||||||||| || ||||||||||| |||||||||||||| || | || | Sbjct 6138 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 6079 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 || | |||||||||||||| |||||||| ||||| || |||||||| | | ||| || Sbjct 6078 GCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 6019 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || || |||||||||||||| | || |||||||| || |||||||| || ||| Sbjct 6018 TTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 5959 >seq1209 Length=37697 Score = 125 bits (138), Expect = 2e-24 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 21593 GTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCA 21652 ||| || || |||||||||||||||||| ||| || | || | || | ||||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 21653 AATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGC- 21711 |||| ||| ||||||| ||||| | |||||||| | | | | || || || || | Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACA 32588 Query 21712 -TAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 |||||||||||||||| | || |||||||| || |||||||| || |||| |||| Sbjct 32587 TTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTT 32528 Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796 |||||||||||||| || | ||||| Sbjct 32527 TCTTCCTCTTGACCGAATCTATAACC 32502 >seq16876 Length=31318 Score = 120 bits (132), Expect = 9e-23 Identities = 182/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || ||||| || Sbjct 28311 GCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTACCAAGATTA 28252 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||| |||||| ||| || | |||||| | || || || || | | | | | | | || Sbjct 28251 GCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCAACTACAAAT 28192 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || || ||| ||| |||||||||||||| || | || | || | ||| Sbjct 28191 TGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCTGTGAAC 28132 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT--AA 21708 |||||| |||||||| ||||| || || ||||| | | |||||| || || || Sbjct 28131 ----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAGTTGTTGAAA 28076 Query 21709 AGCTAGCATATTGGAAGA 21726 |||||||||||||||| Sbjct 28075 CACTAGCATATTGGAAGA 28058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146138120617440