Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq8682 141 1e-28 seq1209 125 8e-24 seq16876 118 1e-21 seq7398 100 3e-16 seq3485 100 3e-16 seq32842 95.1 1e-14 seq3977 87.8 2e-12 >seq8682 Length=13014 Score = 141 bits (156), Expect = 1e-28 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 124088 ATAACTTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTT 124147 |||||||||||||| | || || | ||| | || |||| |||| || | | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 124148 CCGTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTG 124207 || | | |||||| || |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 124208 CAGATACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGA 124267 | ||||| | || ||| ||||| | || ||| ||||| || | ||||||||||| || Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 124268 AGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGT 124327 | | | ||||||||||| ||||| |||||||| | || ||||| ||||| || Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 124328 GCTGCTACTAT 124338 || ||||| || Sbjct 5970 GCAGCTACGAT 5960 >seq1209 Length=37697 Score = 125 bits (138), Expect = 8e-24 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 124171 GTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCA 124230 ||| || || |||||||||||||||| | ||| |||| ||||| | || ||| ||||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 124231 TACACATACAACAGGGAAAACTGCTAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAT 124288 | || ||| |||| || | ||| ||||||| || |||| | ||||||||||| Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGA--GAGTTGTTGAAA 32590 Query 124289 GA--AGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATG 124346 | |||||| |||||||| | || ||||| ||||| || || ||||| || | | | Sbjct 32589 CATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAG 32530 Query 124347 TTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTC 124406 ||||||| ||||| ||||| ||||||| | || || || | ||| | ||||| | Sbjct 32529 TTTCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTCCC 32470 Query 124407 TGAT 124410 |||| Sbjct 32469 TGAT 32466 >seq16876 Length=31318 Score = 118 bits (130), Expect = 1e-21 Identities = 187/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| ||||||||||| |||||||| || ||||| | |||||||||||||||| || Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | || || ||| | || ||| ||| || | | | | || | | |||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 || || ||||||| || || ||| ||| |||||||| ||||| |||| ||||| | | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||| || || ||||| || | |||||||| || || | | | ||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 124280 TTGTTGAATGA--AGCATACTGGAAGA 124304 |||||||| | |||||| ||||||| Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGA 28058 >seq7398 Length=4807 Score = 100 bits (110), Expect = 3e-16 Identities = 170/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 122960 TTAAGAAGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATC 123019 |||||| |||| || || |||||||||||||| || | || ||||| ||| | | || Sbjct 2473 TTAAGA-GAATATTTTTGGTATAGAAAGTCTCAAATTTAGGATCTTCCGCTACACGAATT 2415 Query 123020 TCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCTACGATACCTATAGAT 123079 || ||||| || ||||| || || | ||||||| | | ||| || | || | || Sbjct 2414 TCCTGAGAAACGAAGTCATAGGCACGTAGGTTAAAGCCCAAACCAACTACTCCAAGAGCA 2355 Query 123080 GATGTCCACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTA 123139 |||| | ||| | || || || || ||||||| ||| ||||| | | ||| || Sbjct 2354 CTCATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTG 2295 Query 123140 GAAAATGCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTT 123199 ||||| || | ||||| || | ||||| || | ||| || || | ||| ||||||| Sbjct 2294 GAAAAAGCAACCCCAAAGATTTCGGACCAAAAGCGGTTTGCAGTGACCATTGAATAAGTT 2235 Query 123200 TCTTC 123204 ||||| Sbjct 2234 TCTTC 2230 >seq3485 Length=85743 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 123736 TCCCTCAAGATATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCC 123795 ||| || | ||| ||| ||| | ||||| ||||||||||| || || ||||| || || Sbjct 21502 TCCTTCCAAATAGGAACTTGCCAATCCATGGGTATACCATGAAGTTACAAAGGTTGTACC 21443 Query 123796 TAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCC 123855 | |||||||| |||| | | ||| |||||||| | || || ||||| ||||| || Sbjct 21442 TGTAAACCAACCTCCGACGGCAAAATAGGCACAAGGAAAGAGCAATAGACCGGACCAACC 21383 Query 123856 TATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 || || || ||||| || ||| ||||||||| || | || ||| || Sbjct 21382 TACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCGAA 21335 >seq32842 Length=35535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 181/262 (69%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || || ||||| ||||| || ||||| || || |||||||| ||||| || || Sbjct 3544 TGAGCAGTACAAATGTTGCTGGTAGCCTTGTCCCTCCTGATATGCTGTTCTCTCGTCTGC 3603 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | ||||| || || || || || |||| || ||| | ||||| Sbjct 3604 ATCGCCATACGCAGGGCAGGTTTACC--CGATGAATCAACACTAAC--ACCGATGATTCT 3659 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 || || ||| | |||||||| | | | || || || || ||||||||||||||||| Sbjct 3660 TCCTGGCATCATCCTCTTATATTCTTGAGAGGTGGCCAAAAAAGCAGCATGAGGACCTCC 3719 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552 || ||||| |||| ||||||||| || | || ||| | ||||| ||| | || Sbjct 3720 ATACCCCATTGGAACACCAAACCTCTGTGCAGATCCAACAACGATATCGGCCCCCAATTC 3779 Query 139553 ACCTACAGGTTGCATTAACACC 139574 |||| ||| || | |||||| Sbjct 3780 ACCT---GGTGGCTTCAACACC 3798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | |||||| || || |||||||||||||| || ||||| || || Sbjct 155 ACACCAATAGGGCCCATGCCAGGGCCACCTCCTCCATGTGGAATGCAAAATGTTTTGTGG 214 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || ||||| || ||| || ||| ||| |||||| ||||| Sbjct 215 AGATTGAGATGGCAAACATCAGCCCCAATCCAACCTGGGCTTGTTAGACCCACCTG 270 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || || || ||||| ||||||| | | || || || | || || | || Sbjct 4083 CATAGCTTCAGCAGCAGCAGTCCCTTCATCAAGCAATGAAGCATTGGACATGGGAAGACC 4142 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || |||||||| | ||||| ||||| | |||| ||| | | |||||| || || Sbjct 4143 AGTGAGATCTGTGATTAAAGTTTGATAATTAAGCAAAGATTCAAGACGTCCCTGTGAAAT 4202 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| || ||||| || |||||| ||||||||| Sbjct 4203 CTCAGCTTGATATGGCGTGTACTGAGTATACCAAGCAGGATTCTC 4247 >seq3977 Length=13071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||||||||||||||||||||| | || Sbjct 82 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 23 Query 124109 GCTCTGTTTAGAACATCA 124126 || | ||||| || |||| Sbjct 22 GCACGGTTTATAATATCA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578707105904960