Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq8682 179 5e-40 seq7398 154 2e-32 seq1209 138 2e-27 seq16876 109 7e-19 seq3112 98.7 1e-15 seq33924 91.5 2e-13 seq14341 84.2 3e-11 >seq8682 Length=13014 Score = 179 bits (198), Expect = 5e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 |||||| ||||||||| | || || ||||| || || | |||||||| || |||| Sbjct 6198 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 6139 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | ||||| || ||||| |||||||| || | ||||||||||| ||| | ||| | Sbjct 6138 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 6079 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 ||||||||||| || || || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 6078 GCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 6019 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGAT 27023 |||||||| ||||||||||||||||| || || || || ||||| || || ||||| Sbjct 6018 TTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGAT 5960 >seq7398 Length=4807 Score = 154 bits (170), Expect = 2e-32 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 23475 CCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCA 23534 || ||||| || | ||||||||| || ||||| |||||| | | |||||| || || Sbjct 2480 CCTTTGTTTAAGAGAATATTTTTGGTATAGAAAGTCTCAAATTTAGGATCTTCCGCTACA 2421 Query 23535 CGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCA 23594 ||||| || ||| || || ||||| ||||| || |||| | | |||| | ||| Sbjct 2420 CGAATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTAAAGCCCAAACCAACTACTCCA 2361 Query 23595 ATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGC 23654 | || | | ||| | ||| | || || ||||| ||||||||||| || |||||||| Sbjct 2360 AGAGCACTCATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGT 2301 Query 23655 TTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAA 23714 |||||| ||| |||||||| ||||||| |||||||| || ||||| || ||||| ||| Sbjct 2300 TTATTGGAAAAAGCAACCCCAAAGATTTCGGACCAAAAGCGGTTTGCAGTGACCATTGAA 2241 Query 23715 TAGGTCTCCTCCTCCTGAGT 23734 || || || || | ||||| Sbjct 2240 TAAGTTTCTTCAGCTTGAGT 2221 >seq1209 Length=37697 Score = 138 bits (152), Expect = 2e-27 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 26857 TTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAG 26916 ||||| || |||| || | ||||||| ||| ||| | ||| | |||||||||||| Sbjct 32706 TTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCAG 32647 Query 26917 ATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGA- 26975 || | || | ||||| ||||| ||||||| || || ||| | ||||||||||| | Sbjct 32646 ATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACAT 32587 Query 26976 -AGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCT 27034 |||||||||||||||||| || || || || ||||| || || ||||| | | || | Sbjct 32586 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTTT 32527 Query 27035 CTTCTTCTTGACCGAACTTATAACC 27059 |||| ||||||||||| ||||||| Sbjct 32526 CTTCCTCTTGACCGAATCTATAACC 32502 >seq16876 Length=31318 Score = 109 bits (120), Expect = 7e-19 Identities = 191/277 (69%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| ||| ||| || || | || || || || || || | ||| || || || || Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 |||||| |||| |||| | || |||| ||| || | | ||| |||| || |||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | ||| | || ||||| || ||| || | ||||||||||| ||| | ||| | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || |||||| | || | || ||||| ||||| ||||| || || || ||||| ||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 26965 TTGTTGAATGA--AGCATATTGGAAGATCAAACGACC 26999 |||||||| | |||||||||||||| ||| || || Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGACCAATCGGCC 28048 >seq3112 Length=30994 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 23854 TATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAA 23913 |||| || ||||| | || | ||||||| || |||| ||||| | ||| ||||| Sbjct 7131 TATGAAATGGGTTCAATATCAA-TTATGAATCCCTTGGAAAAAGAGGATGAAT-TGAAAT 7074 Query 23914 TC-GCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATG 23972 | || | | ||| ||||| ||| ||||||||||| ||| | || | || | || Sbjct 7073 ACAGCTACTATACCAAAACTAGGCACAAAGAACCAACCAGACGGACCTAGTAGAGAAATC 7014 Query 23973 AGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGG 24032 | ||| | ||| | || ||| |||| || || || || || || ||||| || || || Sbjct 7013 ATGAACATAGAAATAAAAACAACAATTGGGCCCGAGAATGCGATGGCATTATAAGGTCGC 6954 Query 24033 ATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCA 24092 | | || | || | |||||||| ||||||||||| |||| ||| ||| || | | Sbjct 6953 AGTTGAACAAACCGAGGAAGTTCAAATTGACGTAACATGAAACTTATTAGTCTGAAAGTA 6894 Query 24093 CCGTGGAGAGCAACAAAGGA 24112 | |||||||||||| || || Sbjct 6893 CTGTGGAGAGCAACCAACGA 6874 >seq33924 Length=56609 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 32654 GTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAAC 32713 ||||| ||| ||| || || | || | | || ||| | |||||| |||||| | |||| Sbjct 49886 GTTGGTAATGAAACGCAGGTTAACAAATAACCCTCTGCCATTTGACTATCATCAAGGAAC 49945 Query 32714 GACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCA 32773 ||| || || || |||| ||| || || || || || || || | ||||| || Sbjct 49946 GACCCGTCCGACTGATCAACTGAACCCGAAACCATTTTCCCGGCGCACGTAGAACACGCG 50005 Query 32774 CCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTAT 32833 ||||| | ||||| || ||| ||||| || |||| || ||||||||||| ||||| Sbjct 50006 CCTGCCCTGCAAGAATAAGGTAAGTCAACTCCTGCTTCTTCAGCTGCATCAAGAATGTAA 50065 Query 32834 TGATCATCAG 32843 |||||||| Sbjct 50066 GTATCATCAG 50075 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 26911 AACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTG 26970 |||||||| || || || ||| | ||||| |||||||| || || ||||| ||||||||| Sbjct 2865 AACCAGATACCTACTACAGGCGAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG 2924 Query 26971 AATGA--AGCATATTGGAAGATCAAACG 26996 || | |||||||||||||||||| || Sbjct 2925 AAACACTAGCATATTGGAAGATCAATCG 2952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665159589767360