Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq360 138 1e-27 seq30366 132 6e-26 seq29839 118 1e-21 seq23185 82.4 9e-11 >seq360 Length=27789 Score = 138 bits (152), Expect = 1e-27 Identities = 199/278 (72%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| ||||| ||||| || || || ||||| ||| | || |||||| | ||| ||||| Sbjct 8972 GCCTGGTACCGGAAAAACTCTTCTGGCCCGGGCCGTGGCCGGTGAAGCTGGTGTGCCATT 8913 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| ||||| || | ||||| || ||||||||||||||||||| ||| || Sbjct 8912 CTTCTCGTGTGCTGCCTCAGAGTTTGTAGAACTGTTTGTTGGTGTGGGTGCTTCAAGAGT 8853 Query 175434 TCGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 || || | || || | ||| | ||| | || || ||||| ||||||||||||| Sbjct 8852 GCGGGACTTGTTCGACAAAGCCAAGTCCAAAGC-TCCTTGCATTGTGTTCATTGATGAGA 8794 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||||| ||||| | || | | || ||| | | ||||| |||||||| | Sbjct 8793 TTGATGCTGTGGGGAGACAGAGAGGGGCAGGTCTTGGTGGTGGGAATGATGAGAGAGAGC 8734 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || ||||| ||| | || ||||||||||| ||| Sbjct 8733 AAACTATCAATCAGCTATTGACTGAGATGGATGGGTTT 8696 >seq30366 Length=17364 Score = 132 bits (146), Expect = 6e-26 Identities = 284/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||||||| | || ||||| | || ||| || || || Sbjct 11354 GAGGTGGTGGAGTTTCTCAAGAAGCCTGAGAGGTTCACTGCTGTTGGAGCTCGCATTCCT 11413 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| ||||| || || ||||| | || ||| ||||| Sbjct 11414 AAAGGTGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACTTTGCTAGCCAAGGCCATT 11473 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| || ||||||||| || || | || | | | ||||| ||||||| Sbjct 11474 GCTGGTGAAGCAGGTGTCCCATTTTTCTCCATT--TCAGGTTCTGAGTTTGTTGAGATGT 11531 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||| | ||||| | ||||| |||||||| | | ||| |||||| || Sbjct 11532 TTGTTGGTATTGGTGCTTCTCGAGTTCGTGATCTCTTCAAGAAGGCCAAGGAAAATGCAC 11591 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TG 175525 | || ||||| || ||||||| |||||||| || || ||| | || |||| || Sbjct 11592 CTTGCATTGTGTTTGTTGATGAAATTGATGCTGTTGGACGTCAAAGAGGCACTGGCATTG 11651 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 || | |||||||| ||||||||||| |||| || || || || || ||||||| Sbjct 11652 GT---GGTGGGAATGACGAACGAGAACAAACACTTAACCAGCTTCTAACTGAAATGGATG 11708 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 | ||||| | ||||| ||| | || ||||| |||||||| | | || || |||| Sbjct 11709 GGTTTGAGGGAAACACTGGGATTATTGTAATTGCTGCCACTAACAGGGCAGACATTCTTG 11768 Query 175646 A 175646 | Sbjct 11769 A 11769 >seq29839 Length=13537 Score = 118 bits (130), Expect = 1e-21 Identities = 173/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 || ||||| | ||| || || || ||||||| || ||| | |||||||||| | Sbjct 4600 GAGAAGAATCGGTTGTTCCGTGCTATTGAAACTGTCCCCTGTGTCAAGAAGAAGGCTGAT 4659 Query 65035 TGGGCAATGAAATGGTTTGACA-CAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTT 65093 ||||| | || ||| |||| | || | ||| ||||||||||| |||| ||||| Sbjct 4660 TGGGCGTTAAAGTGGATTGATAGCACGGAATCG----TTCGCCGAGCGTATTTTGGCGTT 4715 Query 65094 TGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAA 65153 ||| ||||| ||||| || |||||||| || |||||| | |||| |||||||| || Sbjct 4716 TGCCTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCCATTTTCTGGTTGAAAAA 4775 Query 65154 GCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCT 65213 || || | ||||| || || |||||||| || | ||||| |||||||| || || Sbjct 4776 ACGTGGGTTAATGCCTGGATTAACGTTCTCAAACGAGTTGATTTCACGAGATGAAGGGCT 4835 Query 65214 CCA 65216 || Sbjct 4836 TCA 4838 >seq23185 Length=144906 Score = 82.4 bits (90), Expect = 9e-11 Identities = 302/462 (65%), Gaps = 11/462 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGT-GGTGCCAAGATCCC 175289 ||| ||||| | || || ||| | || ||| |||| ||| | || || || || || Sbjct 4051 GAGTTTGTGCACTTCCTTAAGAATCCAAAGAAATATGA-GGAGTTAGGAGCAAAAATTCC 4109 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 | ||| || || |||| ||| || ||||| || || || || || || ||| | Sbjct 4110 CAAAGGTGCTCTACTCGTTGGTCCCCCTGGTACTGGGAAAACACTTCTAGCAAAAGCAAC 4169 Query 175350 CGCGGGTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATG 175407 || |||||||| |||| || ||| | ||| || |||| || | ||| |||| ||| Sbjct 4170 TGCAGGTGAATCTGATGTGCCTTTCCTGTCCA-TG-TCTGGATCAGATTTTATGGAAATG 4227 Query 175408 TTTGTTGGTGTGGGTGCCAA-AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA 175466 ||||| || || || ||||| ||||||| | | || ||| || || | || | Sbjct 4228 TTTGTGGGGGTTGG-GCCAACAAGGGTTAGAAACCTGTTTCAAGAAGCTAGACAATGTGC 4286 Query 175467 ACCATGTATTGTCTTCATTGATGAGATTGATGCG-GTGGGCAAGCAACGCAGCGCTGGTG 175525 ||| ||||||| || ||||||||||| |||||| ||| | ||||| | || || | Sbjct 4287 TCCAAGTATTGTATTTATTGATGAGATAGATGCGATTGGACGAGCAAGGGGCCGAGGGGG 4346 Query 175526 GTATG--CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGA 175583 | || || ||||| ||| | ||| || ||||||| | || || ||||| Sbjct 4347 CTTTGGTGGAGGGAATGATGAGCGTGAAAGTACTCTTAATCAGTTGCTGGTTGAAATGGA 4406 Query 175584 TGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCT 175643 ||| |||| | | |||| |||| || |||| | || || | ||||| | Sbjct 4407 TGGGTTTGGAACTACTTCTGGGGTTGTTGTACTTGCTGGTACCAACAGGCCTGATATTTT 4466 Query 175644 TGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGAT 175685 ||| | || || | | || ||||| |||||||| |||| Sbjct 4467 GGATAAAGCTCTGTTGAGGCCTGGTCGGTTTGATCGACAGAT 4508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596269465834240