Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq8682 132 6e-26 seq1209 98.7 1e-15 seq16876 89.7 6e-13 seq13547 82.4 9e-11 seq3573 82.4 9e-11 >seq8682 Length=13014 Score = 132 bits (146), Expect = 6e-26 Identities = 183/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 7930 ATAACTTCCATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTT 7987 |||||||||||||| | || || | ||| ||||| ||| |||| ||| ||| | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATA--TCAGCCCAGGTATTAATTACAC 6153 Query 7988 TACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTG 8047 ||| | | |||||| || |||||||| || || || || || | ||| || ||||| | Sbjct 6152 GACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAG 6093 Query 8048 TGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGT 8107 ||| |||||| | || || ||||||| || ||| || || | | ||| |||||||| | Sbjct 6092 TGCTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAAT 6033 Query 8108 GAAGACTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCAT 8167 | | | | | |||||| || |||||| |||||||| |||| ||||| || |||| Sbjct 6032 GTAAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCAT 5973 Query 8168 GAGCAGCAACAATA 8181 ||||||| || ||| Sbjct 5972 GAGCAGCTACGATA 5959 >seq1209 Length=37697 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/241 (70%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 8016 AAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAAC 8075 ||| || || || || | ||| || | ||| |||| |||||| | || || ||||| | Sbjct 32703 AAATTTCAA-CCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCAGAT 32645 Query 8076 ACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACTGTTGTTAAACGAT 8133 || ||| | || | | ||| ||||||| || |||| | | |||||| || || Sbjct 32644 ACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGA--GTTGTTGAAACAT 32587 Query 8134 --GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCT 8191 ||||| |||||||| |||| ||||| || ||||||||||| || |||| | | || | Sbjct 32586 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTTT 32527 Query 8192 CTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGA 8251 |||| |||||||| || ||||||| | || ||| || | ||| | || || |||| Sbjct 32526 CTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTCCCTGA 32467 Query 8252 T 8252 | Sbjct 32466 T 32466 >seq16876 Length=31318 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||| ||||| |||||||| || ||||| | |||||||||||||||| || Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 7942 CCTAAGTTTGCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATC 8000 || ||| || || ||||| | || ||| ||| |||| | | ||| | | ||| Sbjct 28260 CC-AAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATC 28202 Query 8001 AACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCAT 8060 ||| || ||||||| || || | | || | ||| || ||||| |||| |||||| | Sbjct 28201 AACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAA 28142 Query 8061 AGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACT 8120 || || ||| || || || || | | ||| ||||| || || | | | Sbjct 28141 AGCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGA 28086 Query 8121 GTTGTT-AAACGAT-GCATACTGGAAGATTAATCTACCAA 8158 |||||| |||| | ||||| ||||||| |||| |||| Sbjct 28085 GTTGTTGAAACACTAGCATATTGGAAGACCAATCGGCCAA 28046 >seq13547 Length=78248 Score = 82.4 bits (90), Expect = 9e-11 Identities = 175/258 (68%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 8575 ATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAA 8634 |||| | || ||| ||||| || || || || || | || ||| | || ||| ||| Sbjct 5319 ATAATTAGCTCATAAGGACCACCATTGTATAATCATTTAT-TAACGA--CAACTTTTCAA 5375 Query 8635 ATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATG 8694 || ||||| ||||| || || ||||| | ||| |||| ||||| ||| || || Sbjct 5376 ATTGGATAAAAGTGCAAACCGATAGCTGTAGAAACAGGAATATTAGCACTAGAAATAATA 5435 Query 8695 TTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGT 8754 ||||||||||| | | | || | |||| | || |||||| | ||||| || | Sbjct 5436 TTGTTTCCATAAACTAGAGTTCCAGAAACATATCTACAAATACCACCAATATCTACTAGA 5495 Query 8755 GGAGCAGCAATAAATGCCA-CGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCAT 8813 ||| || ||| || || | ||||| || || |||||||| ||| ||| || || Sbjct 5496 TGAGTAGTAATGAAGGCAATTAATAAATACAGAAGTTGCAGCTAATAAGGTAGGGATTAT 5555 Query 8814 TAGAACTCCAAACCAACC 8831 || ||| |||||||| || Sbjct 5556 TAAAACACCAAACCATCC 5573 >seq3573 Length=19979 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || ||||| || ||||| || | ||||||||||||||| ||||| ||||| || |||||| Sbjct 945 TTGTACAATCATTCATCAAAGGAGGCAGCTTCCCAAATTGGATAAAAGTGCAACCCAATA 1004 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 || |||| || | | |||| ||| || || ||||||| || | | || || Sbjct 1005 GCTGGAGAAGTAGGGATAATGGCACTAGAAATAATATTGTTTCAGTAAAGTAGAGATCCA 1064 Query 8719 GCAACAGGTTCACGA 8733 | | ||||||||||| Sbjct 1065 GAACCAGGTTCACGA 1079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615552559626560