Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq8682 214 2e-50 seq16876 167 3e-36 seq7398 150 2e-31 seq1209 143 3e-29 seq22748 96.9 4e-15 seq6129 87.8 2e-12 seq3977 87.8 2e-12 >seq8682 Length=13014 Score = 214 bits (236), Expect = 2e-50 Identities = 198/251 (79%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 166462 ATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 166521 |||||||| ||||||||||| || || || |||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 166522 TCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 166581 || || || || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 166582 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 166641 | || | ||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 166642 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGT 166701 ||| |||| |||||||| | || |||||||| ||| || ||||||| ||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 166702 ATGGAAGTTAT 166712 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 167 bits (184), Expect = 3e-36 Identities = 204/277 (74%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 166486 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 166543 || || ||| |||||||||| ||| | |||||||||||||| || || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 166544 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 166603 | ||||| |||||||| | || | |||||| || | || | ||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 166604 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 166663 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 166664 ACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTA 166723 | |||||| ||||| || |||||| ||| ||| |||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 166724 ACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 | || || |||||||| || ||||| ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 150 bits (166), Expect = 2e-31 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| | ||||| |||||||||||||| || |||||||| || ||||| | ||||| Sbjct 2221 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTT 2280 Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802 || ||||||| ||| ||||| ||| | ||||||||||||||||| || || || | Sbjct 2281 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 2340 Query 167803 GGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGAT 167862 || | |||| | |||| | ||||| ||| |||| || ||||| || || Sbjct 2341 GGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGAC 2400 Query 167863 TTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAA 167922 ||||||||||| || || | | ||||| ||||| | ||||| ||||||||||| ||| Sbjct 2401 TTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAA 2460 Query 167923 AACATCCTTCTGAATGAAGGT 167943 || || || | || ||||| Sbjct 2461 AATATTCTCTTAAACAAAGGT 2481 >seq1209 Length=37697 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||| | ||||| ||||| |||||||| | | |||||||| ||||||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 166486 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 166543 || || |||||||||||||| ||| | ||||||||||| | || || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 166544 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 166603 ||||| ||||||| || | |||||||||||||| | || | ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 166604 TCAACCTGAACGGTTTCAACTTCAAC 166629 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq22748 Length=18834 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||| ||| Sbjct 10569 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 10628 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 10629 CCTACTTGGGGAG 10641 >seq6129 Length=22929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||| ||||||||| Sbjct 440 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTGGGTTCAAAT 381 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 380 CCTACTTGGGGAG 368 >seq3977 Length=13071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 166675 GATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 166734 ||| || | ||||| ||| ||| |||||||||||||||||||| ||||| || |||||| Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65 Query 166735 TTCCCCCTCGACCTCGCTGCT 166755 ||||| || ||||| |||||| Sbjct 66 TTCCCTCTAGACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560965636131200