Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq8682 214 2e-50
seq16876 167 3e-36
seq7398 150 2e-31
seq1209 143 3e-29
seq22748 96.9 4e-15
seq6129 87.8 2e-12
seq3977 87.8 2e-12
>seq8682
Length=13014
Score = 214 bits (236), Expect = 2e-50
Identities = 198/251 (79%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 166462 ATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 166521
|||||||| ||||||||||| || || || |||||||||||||| || |||||||||
Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019
Query 166522 TCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 166581
|| || || || || |||||||| ||||| |||||||| || || || |||||||||||
Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079
Query 166582 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 166641
| || | ||| ||||| |||||| | || |||||||| |||||||| || | ||
Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139
Query 166642 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGT 166701
||| |||| |||||||| | || |||||||| ||| || ||||||| ||| ||| |||
Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199
Query 166702 ATGGAAGTTAT 166712
|||||||||||
Sbjct 6200 ATGGAAGTTAT 6210
>seq16876
Length=31318
Score = 167 bits (184), Expect = 3e-36
Identities = 204/277 (74%), Gaps = 6/277 (2%)
Strand=Plus/Plus
Query 166486 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 166543
|| || ||| |||||||||| ||| | |||||||||||||| || || || || ||||
Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107
Query 166544 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 166603
| ||||| |||||||| | || | |||||| || | || | ||| ||||| |
Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163
Query 166604 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 166663
||||| | || ||| || |||||||| | | ||||| |||| |||| ||| |
Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223
Query 166664 ACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTA 166723
| |||||| ||||| || |||||| ||| ||| |||| ||||||||||||||| ||||
Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283
Query 166724 ACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760
| || || |||||||| || ||||| ||| ||| |||
Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320
>seq7398
Length=4807
Score = 150 bits (166), Expect = 2e-31
Identities = 190/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742
||||| | ||||| |||||||||||||| || |||||||| || ||||| | |||||
Sbjct 2221 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTT 2280
Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802
|| ||||||| ||| ||||| ||| | ||||||||||||||||| || || || |
Sbjct 2281 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 2340
Query 167803 GGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGAT 167862
|| | |||| | |||| | ||||| ||| |||| || ||||| || ||
Sbjct 2341 GGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGAC 2400
Query 167863 TTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAA 167922
||||||||||| || || | | ||||| ||||| | ||||| ||||||||||| |||
Sbjct 2401 TTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAA 2460
Query 167923 AACATCCTTCTGAATGAAGGT 167943
|| || || | || |||||
Sbjct 2461 AATATTCTCTTAAACAAAGGT 2481
>seq1209
Length=37697
Score = 143 bits (158), Expect = 3e-29
Identities = 156/206 (76%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485
||||| | ||||| ||||| |||||||| | | |||||||| ||||||||||| ||
Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561
Query 166486 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 166543
|| || |||||||||||||| ||| | ||||||||||| | || || || |||||||
Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621
Query 166544 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 166603
||||| ||||||| || | |||||||||||||| | || | ||| ||| | |
Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681
Query 166604 TCAACCTGAACGGTTTCAACTTCAAC 166629
||||| |||| |||| || ||||||
Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707
>seq22748
Length=18834
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
|||||||||||||||| || ||||| ||| ||||||| ||||||||||||||||| |||
Sbjct 10569 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 10628
Query 18188 CCTACCTGGGGAG 18200
||||| |||||||
Sbjct 10629 CCTACTTGGGGAG 10641
>seq6129
Length=22929
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
|||||||||||||||| || ||||| ||| ||||||| || ||||||| |||||||||
Sbjct 440 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTGGGTTCAAAT 381
Query 18188 CCTACCTGGGGAG 18200
||||| |||||||
Sbjct 380 CCTACTTGGGGAG 368
>seq3977
Length=13071
Score = 87.8 bits (96), Expect = 2e-12
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 166675 GATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 166734
||| || | ||||| ||| ||| |||||||||||||||||||| ||||| || ||||||
Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65
Query 166735 TTCCCCCTCGACCTCGCTGCT 166755
||||| || ||||| ||||||
Sbjct 66 TTCCCTCTAGACCTAGCTGCT 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560965636131200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |