Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq8682 176 1e-39 seq1209 125 2e-24 seq16876 120 9e-23 >seq8682 Length=13014 Score = 176 bits (194), Expect = 1e-39 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAA 41985 ||| || |||||||| || |||||||| || | |||||||||||||| || || || || Sbjct 5959 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 6018 Query 41986 TTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGC 42045 || ||| | | |||||||| || ||||| |||||||| |||||||||||||| | || Sbjct 6019 CTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGC 6078 Query 42046 GCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCT 42105 | || | || |||||||||||||| ||||||||||| || ||||||||| | | Sbjct 6079 TTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGT 6138 Query 42106 AGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGG 42165 | | | | || | || || || ||||||||||| ||| |||||||||| || ||||| Sbjct 6139 TGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 6198 >seq1209 Length=37697 Score = 125 bits (138), Expect = 2e-24 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||| | || |||||||||||||| |||| |||| || |||||||| || |||||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 41951 GGTCGGCTTATCTTCCAATATGCTA--GCTTTAATAATTCCCGTAGTCTTCATTTCTTTC 42008 || || | |||||||||||||||| | || || || || | | | | |||||||| | Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 42009 TTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTT 42068 ||||| ||||||| ||| |||| ||||| | || | || | || ||| ||| Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 42069 TCAACTTGAATGGTTTCAACTTTAAC 42094 ||||||||||||||| || || ||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 120 bits (132), Expect = 9e-23 Identities = 182/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 41961 TCTTCCAATATGCTAGCTTT--AATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTG 42018 |||||||||||||||| || || || |||||| | | ||||| || || ||||| || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 42019 GCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAA 42078 |||||| |||||| ||| | || | || | || |||||||||||||| || Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 42079 TGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGC 42138 | ||| || || ||||||| | | | | | | | || || || || | |||||| | Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 42139 TGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAA 42198 || ||| |||||| ||| || ||||| || || |||||||| || || || || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 42199 CTTCCCGCTTGACCTTGC 42216 |||||| || ||||| || Sbjct 28294 CTTCCCTCTAGACCTAGC 28311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146144517558592