Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq8682 161 3e-35 seq1209 109 2e-19 >seq8682 Length=13014 Score = 161 bits (178), Expect = 3e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 42982 ATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAAT 43041 || || || || |||||||| ||||| || | |||||||||||||| || || || Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 43042 AGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCT 43101 ||| ||||| || ||||| || || |||||||| || || || ||||||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 43102 CTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTT 43161 | || | || |||||||| || ||||| |||||||| || || |||||||| | ||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 43162 GATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGG 43220 |||| ||| || ||| || ||| |||||||||||| | || ||||| || ||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 6198 >seq1209 Length=37697 Score = 109 bits (120), Expect = 2e-19 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42955 TTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTT 43014 |||||||||||||| || |||| | | || || || || |||||||| ||||| || | Sbjct 32511 TTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 32570 Query 43015 ATCTTCCAATATGC--GTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTT 43072 |||||||||||||| | || || || || ||||| || ||||| | || |||| Sbjct 32571 ATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTT 32630 Query 43073 GGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGA 43132 |||| | || | || |||||||| || | || | || |||||| | || ||||||| Sbjct 32631 GGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGA 32690 Query 43133 ATGGTTTTAACTTTAAC 43149 |||||| || || ||| Sbjct 32691 ATGGTTGAAATTTCAAC 32707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143464199215904