Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq16876 114 4e-21 >seq16876 Length=31318 Score = 114 bits (126), Expect = 4e-21 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| || |||||||| || ||||||||||| || || ||| Sbjct 28311 GCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTACCAAGATTA 28252 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || |||| | | ||| | ||| ||| | |||| | || | | ||| ||||| | Sbjct 28251 GCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCAACTACAAAT 28192 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||| ||||| ||| || ||||| |||| ||||| | || ||| | | Sbjct 28191 TGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCTGTGAAC 28132 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT--AA 26114 | || | || ||||||| ||| || || ||||| | ||||||| ||| || || Sbjct 28131 ----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAGTTGTTGAAA 28076 Query 26115 AACTCGCATACTGAAAAATTAATCTCCCAA 26144 ||| ||||| || || | |||| |||| Sbjct 28075 CACTAGCATATTGGAAGACCAATCGGCCAA 28046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147641401788160