Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq8682 149 7e-31 seq16876 123 3e-23 seq1209 105 8e-18 seq3977 93.3 5e-14 seq13547 89.7 6e-13 seq3573 87.8 2e-12 >seq8682 Length=13014 Score = 149 bits (164), Expect = 7e-31 Identities = 186/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 155662 ATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAAC 155721 || || ||||||||||| || || || || | |||||||| |||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 155722 TCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCT 155781 || | | | || |||||||| ||||| |||||||| || | || ||| || ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 155782 ATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTA 155841 | ||| | || ||||| |||||| | || |||||||| |||||||| |||||||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 155842 GACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTT 155898 || |||| ||| || || ||| ||||| || ||| ||||||| ||| |||| Sbjct 6140 GA---TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTT 6196 Query 155899 GGTATGGAAGTAAT 155912 ||||||||||| || Sbjct 6197 GGTATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 123 bits (136), Expect = 3e-23 Identities = 191/270 (71%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 155696 TCTTCCAGTATGCA--TCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATG 155753 ||||||| ||||| | ||||||||||| | | | || || ||||| ||||| || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 155754 GCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAA 155813 |||||| | | | | || ||| | ||| | || ||||| |||||| | || Sbjct 28118 GCCTGTAATAGGTAGTTC----ACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 155814 CGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATG 155870 ||| || |||||||| | |||||| || |||| ||| | || || | ||| || Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGA---TAGTCAAGGTCATGTAATTCATACCTG 28230 Query 155871 GGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCA 155930 | |||| ||| |||||| ||| |||||||| |||||| ||||| || ||||| || || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 155931 CAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||||||||| ||||| ||| ||| ||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 105 bits (116), Expect = 8e-18 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||| | ||||| ||||| |||||||||| | | || || ||||||||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 155686 GGTCGTCTTATCTTCCAGTATGC--ATCCTTCAACAACTCAAGAAGTCTT--CACTTCTT 155741 || || | |||||||| ||||| || ||||||||||| | |||| || ||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTC--TCATTCTTTACATTTCTT 32619 Query 155742 CCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGC 155801 || ||||| ||||||| || | |||||| || ||| | ||| | || ||| | Sbjct 32620 CCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGAC 32679 Query 155802 ATTCAACCTTAACGGTTTCAACTTCAAC 155829 |||||| | || |||| || |||||| Sbjct 32680 TTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 155875 GACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 || ||| | ||||| ||| ||||||||||||||| ||||| || ||||| ||||||||| Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65 Query 155935 TTCCCTCTTGACCTTGCTGCT 155955 |||||||| ||||| |||||| Sbjct 66 TTCCCTCTAGACCTAGCTGCT 86 >seq13547 Length=78248 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 155003 TCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCT 155062 |||| | || ||||| |||||| | || |||||| | | | ||||| || | | Sbjct 5581 TCTACATTGGATGGTTTGGTGTTTTAATAATCCCTACCTTATTAGCTGCAACTTCTGTAT 5522 Query 155063 TCATTG-TCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 | ||| | ||||||||| || | | || ||||| |||| ||||||| || | || Sbjct 5521 TTATTAATTGCCTTCATTACTACTCATCTAGTAGATATTGGTGGTATTTGTAGATATGTT 5462 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| || || | ||||| ||||| || || ||| ||||| | | ||| ||| | Sbjct 5461 TCTGGAACTCTAGTTTATGGAAACAATATTATTTCTAGTGCTAATATTCCTGTTTCTACA 5402 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTC-TTGATGAGTGGTTGTA 155240 || || ||| | ||||| ||||| ||||| ||| | || || || | || || || Sbjct 5401 GCTATCGGTTTGCACTTTTATCCAATTTGAAAAGTTG----TCGTTAATAAATGATTATA 5346 Query 155241 CAATGGTGGTCCTT 155254 |||||||||||||| Sbjct 5345 CAATGGTGGTCCTT 5332 >seq3573 Length=19979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 155109 TCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 155168 ||||||||| | |||| ||| || | || | ||||| || || ||| |||| || | Sbjct 1079 TCGTGAACCTGGTTCTGGATCTCTACTTTACTGAAACAATATTATTTCTAGTGCCATTAT 1020 Query 155169 CCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGA 155228 ||||| ||| || ||||| | ||||| ||||| ||||||||||| || | |||| Sbjct 1019 CCCTACTTCTCCAGCTATTGGGTTGCACTTTTATCCAATTTGGGAAGCTGCCTCCTTTGA 960 Query 155229 TGAGTGGTTGTACAA-TGGTGGTCC 155252 ||| || |||||||| |||| |||| Sbjct 959 TGAATGATTGTACAATTGGTTGTCC 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584540969410880