Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq8682 123 7e-24 seq16876 105 2e-18 seq1209 80.6 8e-11 >seq8682 Length=13014 Score = 123 bits (136), Expect = 7e-24 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 40572 ATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTA 40631 || ||||||||||| ||| | | ||||| || ||||||||| ||| ||| || | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 40632 CCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTA 40691 || | | || ||||| || ||||| || || |||||||| | ||| ||||||||||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 40692 GATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGT 40751 ||||| | | ||| | ||| || || | || || ||||| | || ||||| ||| Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 40752 AGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGT 40811 | | ||| |||||||| |||||||| || || | || ||||| ||||| || Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 40812 GCAGCTACGAT 40822 ||||||||||| Sbjct 5970 GCAGCTACGAT 5960 >seq16876 Length=31318 Score = 105 bits (116), Expect = 2e-18 Identities = 183/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| ||||| || || ||||| || ||||| |||||| || Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || ||| | ||||| || ||| | ||| ||| |||| || | ||| | | || Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| | ||||| || || ||| ||| | ||| ||||||||||| ||||| | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | || | | | || || || || ||||| | || || || |||| | |||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 40764 TTGTTGAATGA--AGCATATTGAAA 40786 |||||||| | ||||||||| || Sbjct 28084 TTGTTGAAACACTAGCATATTGGAA 28060 >seq1209 Length=37697 Score = 80.6 bits (88), Expect = 8e-11 Identities = 161/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 40655 GTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCA 40714 ||| || || ||||||| | ||| |||| |||||| ||||| | | ||| | ||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 40715 TATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGA 40774 || | | | || ||||| | | ||||| |||| | | | |||||||| | Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACA 32588 Query 40775 --AGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTC 40832 ||||||||| || || | || ||||| ||||| || ||||||||||| | | |||| Sbjct 32587 TTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTT 32528 Query 40833 TCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC 40890 || | || ||||| || |||| || | || |||||| |||| |||| |||| Sbjct 32527 TCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTCCC 32470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143633718156432