Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq8682 149 7e-31 seq16876 118 1e-21 seq1209 116 4e-21 seq3977 82.4 9e-11 >seq8682 Length=13014 Score = 149 bits (164), Expect = 7e-31 Identities = 186/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 67401 ATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTA 67460 ||||||||||| ||||| || | ||||| || || ||||| ||| ||| || | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---A 6154 Query 67461 CCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATA 67517 | |||| ||||| || ||||||||||| |||||||| || | |||||| |||||| Sbjct 6153 CGACCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATA 6094 Query 67518 GTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAG 67577 || | ||| | || |||||||| || | || ||||| | ||||| |||||||| Sbjct 6093 GTGCTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAA 6034 Query 67578 TGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCA 67637 || | | | |||||||||||| |||||| ||||||||||| || || || || ||| Sbjct 6033 TGTAAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCA 5974 Query 67638 TGAGCAGCAACAAT 67651 |||||||| || || Sbjct 5973 TGAGCAGCTACGAT 5960 >seq16876 Length=31318 Score = 118 bits (130), Expect = 1e-21 Identities = 193/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||| ||| ||||| ||||||||||| || || ||||| || |||||||||||| | Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCA 67472 ||||| || ||||| || |||| ||| ||| |||| || | ||| ||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 67473 ACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATT 67532 || || |||||||||| || ||| || | |||||| |||||||| | ||| | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 || |||||| | | | ||||| | ||||| ||||| || || | | | ||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 67593 TTGTTGAAAGA--TGCATACTGGAAGATCAAGCGACC 67627 ||||||||| | ||||| ||||||| ||| || || Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGACCAATCGGCC 28048 >seq1209 Length=37697 Score = 116 bits (128), Expect = 4e-21 Identities = 182/256 (71%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 67484 GTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCA 67543 |||||| || |||| || | |||||| | |||||| | ||| | || |||||||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 67544 GATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAA 67601 ||| | || |||| | ||||| ||||||| || |||| | |||||||||||| Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGA--GAGTTGTTGAAA 32590 Query 67602 GAT--GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAG 67659 || ||||| ||||||||||| || || || || ||||||||||| || || | ||| Sbjct 32589 CATTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAG 32530 Query 67660 TCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTC 67719 | ||||| ||||| ||||| | ||||| | || || || | || | ||||| | Sbjct 32529 TTTCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTCCC 32470 Query 67720 TGATAAGAGAAGAAGT 67735 |||||| | |||||| Sbjct 32469 TGATAA-ACTAGAAGT 32455 >seq3977 Length=13071 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 86 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566661968863680