Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq8682 192 7e-44 seq16876 178 1e-39 seq7398 178 1e-39 seq1209 158 1e-33 seq3573 105 8e-18 seq13547 102 9e-17 seq22748 96.9 4e-15 seq6129 86.0 7e-12 seq3977 86.0 7e-12 seq22494 84.2 3e-11 seq14314 84.2 3e-11 seq3976 84.2 3e-11 >seq8682 Length=13014 Score = 192 bits (212), Expect = 7e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 67882 ATAACTTCCATACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTA 67941 |||||||||||||| | | ||| ||||| | || || ||||||||| | || | Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 67942 CCAGAACTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTG 68001 || |||||||| | ||| |||||||| ||||||||||| | |||||| ||||| ||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 68002 CTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGC 68061 |||| ||| | || |||||||| ||||| || |||||||| ||||| |||||||| || Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 68062 AGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGT 68121 | ||||| ||||||||||| |||||| |||||||||| || || || || ||||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 68122 GCAGCAACAAT 68132 ||||| || || Sbjct 5970 GCAGCTACGAT 5960 >seq16876 Length=31318 Score = 178 bits (196), Expect = 1e-39 Identities = 202/270 (75%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||| ||| ||||| ||||||||||| || || ||||| ||||||||||||||| || Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | | ||| |||| | || |||| ||||||| | | || | ||| ||||||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 | | | | |||||||| || ||| ||| | |||||| ||||| ||||||| ||| | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 || |||||| |||| | |||||||| ||||| ||||| || || | ||||||||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 68074 TTGTTGAACGA--TGCATACTGGAAGATCA 68101 |||||||| | ||||| ||||||| || Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGACCA 28055 >seq7398 Length=4807 Score = 178 bits (196), Expect = 1e-39 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 66674 ACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGC 66733 ||||| || || ||||| || || || ||||| ||||| || | || ||||| ||| | Sbjct 2481 ACCTTTGTTTAAGAGAATATTTTTGGTATAGAAAGTCTCAAATTTAGGATCTTCCGCTAC 2422 Query 66734 TCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACC 66793 | || || || || || |||||||| ||||| ||||| | | | ||||| | || Sbjct 2421 ACGAATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTAAAGCCCAAACCAACTACTCC 2362 Query 66794 GATGGAACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCT 66853 | | ||| |||| | ||| | || || ||||| |||||||||||||| ||||| | Sbjct 2361 AAGAGCACTCATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACG 2302 Query 66854 CTTATTGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGA 66913 |||||| ||| |||| |||||||| | ||||| |||||||||||||| |||||||| Sbjct 2301 TTTATTGGAAAAAGCAACCCCAAAGATTTCGGACCAAAAGCGGTTTGCAGTGACCATTGA 2242 Query 66914 GTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGC 66961 ||||||||||| ||||||| | || || || | ||| || ||||| Sbjct 2241 ATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCATGGAATGTATTTGC 2194 >seq1209 Length=37697 Score = 158 bits (174), Expect = 1e-33 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 67965 GTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCA 68024 |||||| || ||||||||| |||||| | ||| ||||||| ||| | || |||||||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 68025 GATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGA 68084 ||||| || ||||||| ||||| ||||||| || | ||| | ||||||||||| | Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACA 32588 Query 68085 T--GCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTC 68142 | ||||| |||||||||| || || || || ||||| ||||| || || | |||| Sbjct 32587 TTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTT 32528 Query 68143 TCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||| ||||||||||| | ||||| | || || ||| |||| ||||||| Sbjct 32527 TCTTCCTCTTGACCGAATCTATAACCTAAATTAGCAGATTCATTTTCTATGGTTTC 32472 >seq3573 Length=19979 Score = 105 bits (116), Expect = 8e-18 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 68542 GGACCACCA-TTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTG 68600 |||| |||| |||||||| || ||||||| || || ||||||||||| ||||||||||| Sbjct 935 GGACAACCAATTGTACAATCATTCATCAAAGGAGGCAGCTTCCCAAATTGGATAAAAGTG 994 Query 68601 AAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAG 68660 | ||||| || ||| |||| | || |||| |||||| || ||||| | || || Sbjct 995 CAACCCAATAGCTGGAGAAGTAGGGATAATGGCACTAGAAATAATATTGTTTCAGTAAAG 1054 Query 68661 AAGTGAACCAGCAACAGGTTCACGA 68685 || || |||| | ||||||||||| Sbjct 1055 TAGAGATCCAGAACCAGGTTCACGA 1079 >seq13547 Length=78248 Score = 102 bits (112), Expect = 9e-17 Identities = 181/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGT 68599 |||||||||||||||| || || | || || | | ||| ||||| |||||||||| Sbjct 5332 AAGGACCACCATTGTATAATCATTTATTAACGA---CAACTTTTCAAATTGGATAAAAGT 5388 Query 68600 GAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACA 68659 | | ||| || || | ||| ||||| | ||||| |||||| || ||||| ||||| | Sbjct 5389 GCAAACCGATAGCTGTAGAAACAGGAATATTAGCACTAGAAATAATATTGTTTCCATAAA 5448 Query 68660 GAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGA 68719 || | |||| |||| | || ||||||| | || || || | ||| || |||| Sbjct 5449 CTAGAGTTCCAGAAACATATCTACAAATACCACCAATATCTACTAGATGAGTAGTAATGA 5508 Query 68720 AGGCGACGATGAA--ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAA 68777 |||| | | || ||||| ||||| || | | |||||||| || | || || || Sbjct 5509 AGGCAATTAATAAATACAGA-AGTTGCAGCTAATAAGGTAGGGATTATTAAAACACCAAA 5567 Query 68778 CCAACCAACGTAAAGGCGGTT 68798 ||| |||| ||| || |||| Sbjct 5568 CCATCCAATGTAGAGATGGTT 5588 >seq22748 Length=18834 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||||||| ||||||| ||| || Sbjct 10649 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGC 10592 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 10591 TCTACCACTGAGCTACTGAGGA 10570 >seq6129 Length=22929 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||| ||||||| || ||||||| ||| ||||| || ||| Sbjct 368 CTCCCCAAGTAGGATTTGAACCCACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 427 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 428 AGCTACTGAGGA 439 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||| | Sbjct 86 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 27 Query 67899 ACCAGCGCGGTT 67910 | ||| ||||| Sbjct 26 ATTAGCACGGTT 15 >seq22494 Length=12707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 67986 GTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGC 68045 |||||| ||||| ||||||| ||| | || |||||||||||||| || |||||||| || Sbjct 7556 GTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGC 7497 Query 68046 AGCAAGGAAGAAGTGCAGCGAACG 68069 ||| |||||||| || | ||||| Sbjct 7496 AGCTAGGAAGAAATGTAAAGAACG 7473 >seq14314 Length=96451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 67893 ACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATC 67952 ||| ||| ||| |||| | || || | |||| || | | || | ||| |||||| Sbjct 62713 ACCAAAATTAGCATGGTTAATAATATCCGTCCAGTTATGAATTACATGACCTTGACTATC 62654 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || | ||| |||||||| || ||| ||| | |||||| | ||| ||||||| ||| | Sbjct 62653 AACTACAGATTGGTTGAAATTTTAAC-ATTTAAGTTGAAAGACATAGTGCTAATACCTAA 62595 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCAT 68043 || |||||||||||||| || ||||||||| Sbjct 62594 AGCGGTGAACCAGATACCTACTACAGGCCAT 62564 >seq3976 Length=23881 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 67966 TTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAG 68025 ||||| || ||||||| | ||||| ||||| ||||||| ||| | || ||||||||| Sbjct 23881 TTGAAATTTCAACCATTTAATTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAACCAG 23822 Query 68026 ATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACG 68069 ||||| | ||| |||| ||||| |||||||| || | ||||| Sbjct 23821 ATACCTATTACAAGCCAAGCAGCTAGGAAGAAATGTAAAGAACG 23778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571766599431360