Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18711 138 2e-27 seq21318 118 2e-21 seq3045 102 1e-16 seq22339 95.1 2e-14 >seq18711 Length=80062 Score = 138 bits (152), Expect = 2e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||||| || || || ||| || ||||| || || || |||||||| || Sbjct 40788 AATATTATAGTCGGCTAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCT 40729 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||| || || || || ||||||||||||||||| || | ||| | || ||||| Sbjct 40728 CTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGT 40669 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| ||| ||||||||| | ||| || ||||| || |||| || || ||||| ||||| Sbjct 40668 ATCTGAACTCTCAACTTCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTG 40609 Query 193358 CATT 193361 |||| Sbjct 40608 CATT 40605 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | || || || |||| ||| | || | ||||| || ||| Sbjct 40157 ATTTGCATTCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTA 40098 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | |||| | ||| || | || ||||| || ||||| | ||||| || Sbjct 40097 TAATCGGCGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGG 40038 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||||||||| || ||||||| |||| ||| ||||||||| ||| Sbjct 40037 TCTGGAGGAATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAA 39978 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| ||||| || || || ||||| || || |||||||| Sbjct 39977 CTTTCAACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 100 bits (110), Expect = 5e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || || | ||||||||| | || || ||| || Sbjct 40386 AATTTGCATTCCACCACGAAGACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTT 40327 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || || | ||| || | |||||| || || || |||| |||||| || Sbjct 40326 GTAGTCCGCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTG 40267 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || ||||||||||| || || | || | ||| || |||||||| Sbjct 40266 GTCCGGGGGGATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGA 40207 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || |||| || || |||||||| || || ||||| || || ||||||||| Sbjct 40206 GCTTTCCACCTCTAAGGTGATGGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCATT 40149 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || | ||| || ||| || || |||| || || | | Sbjct 41048 CGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCA 40989 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || |||||||| || ||||| || || || || || ||||| || || || || Sbjct 40988 TCCTCCAACTGTTTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTG 40929 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | || |||||| || || |||||| || | ||||| Sbjct 40928 TCCTGGATTTTAGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATG 40869 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||| || ||||||||||||||||| Sbjct 40868 GTCTTTCCTGTTAAGGTCTTTACAAATATTTGCAT 40834 >seq21318 Length=12341 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||||| |||| || || ||||| ||||| | | |||| | Sbjct 4986 CGAAGAACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCG 5045 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || |||||||| | |||||||||||||||||| || || || || Sbjct 5046 TCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTG 5105 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | ||| ||| ||||| ||| || || || ||||| || Sbjct 5106 TCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATG 5165 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || |||||||||||||| Sbjct 5166 GTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | |||||| || || || |||||||| | || || || || ||||| Sbjct 4515 ATTCCACCACGCAATCGGAGCACAAGGTGCAATGTTGATTCCTTCTGGATGTTGTAGTCT 4574 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || ||| || || | ||| || || ||||| || ||||||||||| ||||| Sbjct 4575 GCTAAAGTCCTACCGTCTTCCAGTTGCTTACCAGCAAATATCAATCTCTGTTGGTCAGGT 4634 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| || |||| ||| | ||| ||| || || ||| || Sbjct 4635 GGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTGTCTGAACTTTCG 4694 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | || || || || || |||| || || || || || |||||| Sbjct 4695 ACTTCCAATGTGATTGTCTTCCCCGTTAATGTCTTCACGAAAATCTGCATT 4745 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || || || || | || | |||||| |||||| ||||| | Sbjct 4062 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTGGACTCTTTCTGAATATTGTAGTCAGCC 4121 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || ||||||||||| ||||| || | |||||||||||| || || Sbjct 4122 AAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGA 4181 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || ||||| || || | || | ||| || || || || |||||| Sbjct 4182 ATCCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACT 4241 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || || || ||||| ||||| || || || || ||||| Sbjct 4242 TCCAATGTGATTGTCTTTCCTGTCAGCGTCTTCACGAAAATCTGCAT 4288 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || ||| || | ||| | ||||| || || ||||| Sbjct 5193 ATTTGCATCCCACCACGAAGTCTAAGCACTAAATGGAGTGTAGATTCCTTCTGGATATTG 5252 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | ||||| ||| || | ||| || || ||||| || | |||||||| Sbjct 5253 TAATCGGCAAGCGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGG 5312 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||||||||| || || | |||| ||| ||| || || || Sbjct 5313 TCGGGTGGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAG 5372 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || ||||||| || |||||||| Sbjct 5373 CTTTCCACCTCGAGGGTGATTGTTTTGCCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 >seq3045 Length=115554 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| || ||||| || | ||||||||| || || || || ||||| || Sbjct 11339 ATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTT 11398 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| || | || ||| || || ||||||||||| || | || || Sbjct 11399 GTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGAT 11458 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| |||||||| Sbjct 11459 GGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || || ||||| | || | || || ||| || Sbjct 11486 AATTTGCATGCCACCGCGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGAATGTT 11545 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | |||| ||| || || || ||||||||||| || |||||||| || Sbjct 11546 GTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTG 11605 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| ||||| || || |||| || | || |||||| ||||| Sbjct 11606 GTCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGA 11665 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || || || || |||||||| Sbjct 11666 CGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 11722 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||| ||||| || || || | || | ||| || ||| || ||||| Sbjct 11037 ATTCCTCCCCTCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCA 11096 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || ||||||||||| || || ||||| || || || Sbjct 11097 GCAAGAGTCCTTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 11156 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || ||||| | || | ||| || ||||||||| ||| Sbjct 11157 GGGATGCCTTCCTTATCCTGAATTTTCGCCTTAACATTGTCGATGGTATCGGAACTCTCG 11216 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || | || || || || || ||||| Sbjct 11217 ACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 11266 >seq22339 Length=139203 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || ||||| || | |||| ||| || || || |||||| Sbjct 90535 ATACCACCACGAAGACGGAGGACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 90594 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||||| | ||| || | ||| |||||||| || || | | || ||||| || Sbjct 90595 GCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGATCTGGG 90654 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || || |||| |||| || || ||||| || ||||| Sbjct 90655 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTATCAGATGACTCG 90714 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || |||||||| Sbjct 90715 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 90764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899201783871360