Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq21318 140 5e-28 seq18711 127 3e-24 seq3045 93.3 6e-14 >seq21318 Length=12341 Score = 140 bits (154), Expect = 5e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||| ||||| || || || ||||| || || Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || |||||||| || ||||| || || || ||| Sbjct 4912 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 4853 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| ||||| ||| ||| || |||||||||| Sbjct 4852 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAAC 4793 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || ||| || ||||| | ||||| ||| | |||| Sbjct 4792 AT-TCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATT 4755 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| ||||| ||||| | || || ||| |||| Sbjct 5200 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 5141 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| ||||| || || || || ||||| || ||| Sbjct 5140 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCTCCTGATCAA 5081 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||| |||||| ||| ||||||||||| || || Sbjct 5080 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGA 5046 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || || ||||| | ||||| ||||| || || | || || ||| || Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||||||||| ||||| || || || ||| Sbjct 5368 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 5309 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||| || || ||| | |||| | | ||||| ||| Sbjct 5308 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAAT 5249 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || | || || ||||||||| | ||| Sbjct 5248 ATCCAGAAGGAATCTACACTCCATTTAGTGCTTAGA 5213 >seq18711 Length=80062 Score = 127 bits (140), Expect = 3e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || || || |||||||| ||||| || ||||| || ||| Sbjct 40605 AATGCAAATTTTTGTGAAGACCTTAACCGGAAAAACAATTACTTTGGAAGTTGAGAGTTC 40664 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| ||| ||| ||||||||||||||||| || || ||||| || Sbjct 40665 AGATACTATCGACAACGTTAAAGCTAAGATACAAGATAAAGAAGGGATCCCACCAGACCA 40724 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || || |||| || || ||||| | || ||| ||| ||| || | || ||||| Sbjct 40725 ACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAGGATGGCAGGACTCTAGCCGACTATAA 40784 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 ||| || ||| || |||| || || || ||| Sbjct 40785 TAT-TCAAAAGGAATCGACTCTCCACTTGGTG 40815 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || ||||| || || | || || ||| |||| Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| || ||||||||||| || |||||||| || Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| || || ||||||||||| ||| |||| | | |||||||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| ||||| | || || ||||| ||| Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGTG 40131 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || || || ||||||||| |||| || ||| || Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||| || ||||| |||||||| || || || || || Sbjct 40437 AGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 40496 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||| | || || ||||||||||||||| | || || | || || || Sbjct 40497 GCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACACTAGCCGACTACAA 40556 Query 156002 TATATCCAAA-GAGGCGACGCTTCA 156025 ||| || ||| ||| | || ||||| Sbjct 40557 TAT-TCAAAAGGAGTCCACTCTTCA 40580 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || || || ||||| || || ||||| || || || || Sbjct 40834 ATGCAAATATTTGTAAAGACCTTAACAGGAAAGACCATAACATTGGAGGTTGAGAGCTCA 40893 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||||| |||||| || || || || || || ||||| || || Sbjct 40894 GACACTATTGACAACGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 40953 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||| || || || ||| | || ||| Sbjct 40954 CAAAGGTTGATTTTCGCTGGAAAACAGTTGGAGGAT 40989 >seq3045 Length=115554 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || |||||||||||||| || || | || ||||| ||| Sbjct 11266 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAAACCATCACCCTTGAGGTCGAGAGTTCC 11207 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||||| || ||||| |||||||| || ||||| || Sbjct 11206 GATACCATCGACAATGTTAAGGCGAAAATTCAGGATAAGGAAGGCATCCCCCCAGACCAG 11147 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| |||||||| || ||| Sbjct 11146 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGAT 11111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731503795196800