Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq18711 132 9e-26 seq21318 118 2e-21 seq3045 113 9e-20 seq22339 100 6e-16 seq14089 87.8 4e-12 >seq18711 Length=80062 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || || | |||||| | || || || | ||| | || ||| || |||||||| || Sbjct 40835 ATCCCTCCACGAAGACGCAGCACCAAGTGGAGAGTCGATTCCTTTTGA-ATATTATAGTC 40777 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || | |||| |||||||| || ||||| || ||||| |||||||| || || Sbjct 40776 GGCTAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGG 40717 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||||||||||||||| ||| ||| || || |||| |||||| || Sbjct 40716 TGGGATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTC 40657 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||| ||||| || ||||| || || | ||| || |||||| Sbjct 40656 AACTTCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTGCATT 40605 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | |||||||| || || | || || || || || || Sbjct 40379 ATTCCACCACGAAGACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCC 40320 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||||||||| ||||||| |||||| || || || Sbjct 40319 GCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGG 40260 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || ||| || |||||| || | ||| || ||| Sbjct 40259 GGGATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCC 40200 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||| || ||||||||||| || | ||||| | || || |||||| Sbjct 40199 ACCTCTAAGGTGATGGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCATT 40149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||| | || ||||||| || | ||||| || |||||||| Sbjct 40151 ATTCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCG 40092 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | || || ||||| || || | ||||| || || || Sbjct 40091 GCGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGA 40032 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||| || ||||| |||||||| |||| ||| || ||| Sbjct 40031 GGAATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCA 39972 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| || || | ||||| | || || ||||| Sbjct 39971 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 >seq21318 Length=12341 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || ||||| | |||| || || |||||| || ||| Sbjct 4971 ATACCCCCACGAAGCCGAAGAACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCA 5030 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || || | || ||||||||||| || | ||||||||||||||| Sbjct 5031 GCAAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGA 5090 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| |||||| || ||||| || | ||| || ||| Sbjct 5091 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 5150 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||||||||| ||||| | || || | |||||| ||||| Sbjct 5151 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 114 bits (126), Expect = 3e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| | | |||||||| | |||| || || |||||| ||||| Sbjct 5199 ATCCCACCACGAAGTCTAAGCACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 5258 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||| |||||||||||||| | |||||||| || ||| Sbjct 5259 GCAAGCGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 5318 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || || |||||||| || | ||||| ||| Sbjct 5319 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 5378 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || || || ||||| ||||| | ||||| || || || ||||| | | |||| Sbjct 5379 ACCTCGAGGGTGATTGTTTTGCCAGTAAGGGTTTTTATGAAGATTTGCATCTGTTAAGAA 5438 Query 192547 A 192547 | Sbjct 5439 A 5439 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 || ||||| || || | || ||| || || |||||||| | || || | | || || Sbjct 4764 ACCAAATGCAACGTCGATTCCTTTTGA-ATGTTATAATCTGCTAGAGTCCTGCCGTCTTC 4822 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 | || ||||||||||| || || |||||||| |||||||| || || || |||||||| Sbjct 4823 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTG 4882 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || ||| ||| |||||| || | |||||| || ||||| | || || ||||| Sbjct 4883 GATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCACTTCCAAGGTGATTGTTTT 4942 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| | ||| |||||||| Sbjct 4943 GCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 102 bits (112), Expect = 2e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || | ||| || | | || |||| ||| ||||||||||| || ||||| Sbjct 4562 GATGTTGTAGTCTGCTAAAGTCCTACCGTCTTCCAGTTGCTTACCAGCAAATATCAATCT 4621 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| |||||||| || || ||||| ||||| || || ||| ||||| || | Sbjct 4622 CTGTTGGTCAGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGT 4681 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| ||| ||||| | || || || || || |||||||| || | || ||||| Sbjct 4682 GTCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCCGTTAATGTCTTCACGAAAATCTG 4741 Query 192534 CATT 192537 |||| Sbjct 4742 CATT 4745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| || || || |||| ||||||||||| ||||||||||| | |||| Sbjct 4107 ATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTC 4166 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| || || || || ||||| || || || ||||| || | Sbjct 4167 TGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTG 4226 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| ||| ||||| | || || || || || || | || || | || |||||| Sbjct 4227 TCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTCAGCGTCTTCACGAAAATCTGC 4286 Query 192535 AT 192536 || Sbjct 4287 AT 4288 >seq3045 Length=115554 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | ||||| ||| || ||| || ||||| Sbjct 11265 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCT 11324 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| ||||||||||| ||||||||||| | ||||||||| || || Sbjct 11325 GCAAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGG 11384 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||||| || || Sbjct 11385 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 11444 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || || | ||||| | ||| || ||||| Sbjct 11445 ACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 >seq22339 Length=139203 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | || | || | ||| || ||| || |||||| Sbjct 90307 ATACCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 90366 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || ||||| || || || ||||| | ||| ||||| || || Sbjct 90367 GCAAGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGG 90426 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || || ||| || | ||| || ||||| Sbjct 90427 GGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCA 90486 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||||||||| || | || |||| || |||||||| Sbjct 90487 ACCTCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq14089 Length=105206 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| |||| || ||||| | || || || || | || | || || ||| |||||| Sbjct 70551 ATAGTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAA 70610 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | ||||| |||| |||||||| ||||||||||| ||||||||||| || ||| Sbjct 70611 TCGGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCA 70670 Query 192424 GGTGGTATTCCTTCTTTATCTTGTAT 192449 || || || ||||| || || || || Sbjct 70671 GGAGGAATACCTTCCTTGTCCTGCAT 70696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983972325814800