Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq18711 134 2e-26 seq21318 131 3e-25 seq3045 104 4e-17 seq22339 95.1 2e-14 seq14089 87.8 3e-12 >seq18711 Length=80062 Score = 134 bits (148), Expect = 2e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||| || | || || | | || |||||||| || ||||| |||||||| || Sbjct 40788 AATATTATAGTCGGCTAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCT 40729 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| || ||||||||||||||||| ||| ||| || || ||||| Sbjct 40728 CTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGT 40669 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| || ||||| | |||||| ||||| || ||||| || || | || || || Sbjct 40668 ATCTGAACTCTCAACTTCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTG 40609 Query 172067 CATT 172070 |||| Sbjct 40608 CATT 40605 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | |||||||| || || | || || ||| || || || Sbjct 40379 ATTCCACCACGAAGACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCC 40320 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | |||||||||||| || |||| |||||| ||||| || Sbjct 40319 GCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGG 40260 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || ||| || |||||| || ||||| || ||| Sbjct 40259 GGGATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCC 40200 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || ||||||||||| || | ||||| | ||| || |||||| Sbjct 40199 ACCTCTAAGGTGATGGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCATT 40149 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||||| || | ||||| || |||||||| | | | ||| | || || Sbjct 40130 ACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCG 40071 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | || || ||||| ||||| | ||||| ||||| || || |||||||||||||| || Sbjct 40070 AGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGA 40011 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| |||||||| |||||||| || ||| || || || || || ||||| Sbjct 40010 ATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTTATTGTTTTG 39951 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| | ||| || ||||| Sbjct 39950 CCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 >seq21318 Length=12341 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | || ||||| || || | || || ||| ||||||||| Sbjct 4743 ATTCCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCT 4802 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | |||| || | || |||||||||||||| || ||||||||||||||| Sbjct 4803 GCTAGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGT 4862 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || ||| ||| |||||| || |||||||| || Sbjct 4863 GGAATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCC 4922 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| ||||| || ||||| | || |||||||| Sbjct 4923 ACTTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || |||| ||||| | |||| |||| ||| ||||||||||| || |||||| Sbjct 4563 ATGTTGTAGTCTGCTAAAGTCCTACCGTCTTCCAGTTGCTTACCAGCAAATATCAATCTC 4622 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||||||||| || || ||||| ||||| || || ||| ||||| || || Sbjct 4623 TGTTGGTCAGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTG 4682 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| ||| ||||| | || || || || || |||||||| || | ||| |||||| Sbjct 4683 TCTGAACTTTCGACTTCCAATGTGATTGTCTTCCCCGTTAATGTCTTCACGAAAATCTGC 4742 Query 172068 ATT 172070 ||| Sbjct 4743 ATT 4745 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || ||||| | |||| || || ||||| || || Sbjct 4971 ATACCCCCACGAAGCCGAAGAACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCA 5030 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| |||| || | || |||||||||||||| | ||||||||| ||||| Sbjct 5031 GCAAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGA 5090 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| |||||| || ||||| || ||||| || ||| Sbjct 5091 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 5150 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||||||||| ||||| | || || | ||||| ||||| Sbjct 5151 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | |||||||| | |||| || || ||||| ||||| Sbjct 5199 ATCCCACCACGAAGTCTAAGCACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 5258 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||| ||||||||||| || | ||||||||||| ||| Sbjct 5259 GCAAGCGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 5318 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || |||||||| || || ||||| ||| Sbjct 5319 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 5378 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| | ||||| ||||| || ||||| Sbjct 5379 ACCTCGAGGGTGATTGTTTTGCCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 ||||| | || ||||| | ||| | || || || || ||||| | ||||| || Sbjct 4299 AGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCTAAAGTTCTG 4358 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || || | |||||| || ||||| || | ||||| ||||||||||| ||||| || Sbjct 4359 CCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCC 4418 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| || || || ||||| ||||| || || ||||||||| ||||| Sbjct 4419 TTGTCTTGAATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTG 4478 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || || ||||| || | ||| ||||||||| Sbjct 4479 ATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCATT 4517 Score = 89.7 bits (98), Expect = 9e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAA 171937 |||||| |||||| || || | |||| || | || ||||||||||| |||||||| Sbjct 4097 CTCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAA 4156 Query 171938 AATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || | ||||||||| || ||||| || || || || ||||| || || || ||||| Sbjct 4157 GATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 4216 Query 171998 AGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 172057 || || ||||| ||| ||||| | || || || || || || | || || | Sbjct 4217 GTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTCAGCGTCTTCAC 4276 Query 172058 GAATATCTGCAT 172069 ||| |||||||| Sbjct 4277 GAAAATCTGCAT 4288 >seq3045 Length=115554 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | ||| | ||||| ||| || || || |||||| Sbjct 11265 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCT 11324 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || ||||||||||| |||||||| || | |||||||||||| || Sbjct 11325 GCAAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGG 11384 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || ||||| || || Sbjct 11385 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 11444 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || | ||||| | || || ||||| Sbjct 11445 ACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 >seq22339 Length=139203 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || | || | ||| || || || ||||| Sbjct 90307 ATACCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 90366 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || ||||| || || || || || | ||| |||||||| || Sbjct 90367 GCAAGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGG 90426 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || || || ||| || ||||| || ||||| Sbjct 90427 GGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCA 90486 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||||||||| || | || |||| ||| |||||||| Sbjct 90487 ACCTCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq14089 Length=105206 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| |||| || ||||| | || || || || | || | || || || |||| Sbjct 70549 TCATAGTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTAT 70608 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | | | ||| | || |||||||| ||||||||||||||||||||||| |||| Sbjct 70609 AATCGGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGT 70668 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTAT 171982 |||| || || ||||| || || || || Sbjct 70669 CAGGAGGAATACCTTCCTTGTCCTGCAT 70696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904680626078400