Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14050 141 3e-28 seq16222 118 3e-21 seq360 107 6e-18 seq29839 100 8e-16 seq25252 98.7 3e-15 seq9269 95.1 4e-14 seq36543 84.2 6e-11 seq27295 84.2 6e-11 >seq14050 Length=119181 Score = 141 bits (156), Expect = 3e-28 Identities = 337/498 (68%), Gaps = 15/498 (3%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| | ||| ||| |||||| ||||| | |||||| ||| | || Sbjct 117982 ATCAAATCGACCAGGTCTCAATAAAGCTTTGTCTAAAATATCAGGTCTGTTAGTTCCAGC 118041 Query 288912 CAATACAACAATA---GATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 | |||||||| | || ||| | |||||||||||| || | |||||| Sbjct 118042 AAGTACAACAACACCAGAAGTGGT---CCCAAATCCATCCATCTCAACCAACAATTGATT 118098 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || ||| | |||||||| |||||| ||| | ||| || | ||| | Sbjct 118099 TAGAGTACTTTCACGCTCATCATTAGAACCTGA-GAAACCTCCGCGTCCC--CTTGCTCG 118155 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| ||||| | || |||| | ||| || || | Sbjct 118156 ACCAATTGCATCAATCTCATCAATAAAAATTATACTAGGAGCACATTGCCTGGCTTCTTG 118215 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| || | |||| ||||| ||||||| |||| || | || || ||| | Sbjct 118216 AAACAAGTTTCTAACCCTTGATGGTCCAACACCAACAAACATCTCCATGAAATCTGAACC 118275 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | ||| | ||| || ||| || || ||| | ||||| || |||| Sbjct 118276 AGATA-TAGACAGGAAAGGCACACCTGATTCACCAGCAGTTGCTTTTGCCAGTAGGGTCT 118334 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| ||||| | || || | |||||||| | ||| ||||| | || Sbjct 118335 TTCCAGTGCCAGGAGGTCCAACCAAAAGTGCACCCTTTGGAATTTTGGCCCCCA-ATTCT 118393 Query 289268 T-ATA-TTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | ||| ||||| ||| |||| | || | ||| | ||| | ||| | ||||||||| Sbjct 118394 TCATACTTTCT-AGGATTCTTGAGGAAGTGTACGAACTCCATGATTTCTTGTTTTGCCTC 118452 Query 289326 ATCACATCCTGCTACATC 289343 |||||| ||||| ||||| Sbjct 118453 ATCACAACCTGCAACATC 118470 >seq16222 Length=7621 Score = 118 bits (130), Expect = 3e-21 Identities = 280/420 (67%), Gaps = 16/420 (4%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| ||||| || || |||||||| ||| | Sbjct 3078 TAAAACCATCCATTTCAGTGAGCAACTGATTCAGTGTCTGCTCTCTTTCATCGTTT---C 3022 Query 288998 CTCTTGAATCACCCGAATCGCT---CCttt--ttttACCAACAGCATCAATTTCGTCAAT 289052 ||| |||| ||| || ||| | || | ||||||||||||||||| ||||| Sbjct 3021 CTC------CACC--AATGCCTGTGCCTCTCATTCTCCCAACAGCATCAATTTCATCAAT 2970 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 |||| | || || ||||| | | || | ||||| ||||| || | || || Sbjct 2969 AAAAACTAAGCATGGGGAATTGGCTTTTGCTTTGTTGAATAAATCTCTCACTCTTGAGGC 2910 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 |||| ||||| |||| |||| || |||||| | || | | ||| | || Sbjct 2909 CCCAACCCCAACGAACATCTCTATGAACTCAGAACCAGAGAGAGAGAAGAAAGGAACTCC 2850 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||| | || | |||| | ||||| |||||||| ||||| || |||| Sbjct 2849 AGCTTCCCCTGCAATGGCTTTAGCCAACAAGGTCTTTCCTGTTCCCGGTGGCCCAACTAA 2790 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| || ||||||| | |||| ||| | | | | ||||| || |||| ||||| Sbjct 2789 GAGAACCCCTTTTGGTATTCTTGCTCCAACTGCTGAAAACTTCTCTGGAGTCTTCAAAAA 2730 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || ||||| || | | || | || || |||||| || || |||||| |||| || Sbjct 2729 CTCCACAATCTCTTGGAAATCTTGCTTCGCTTCATCAACCCCAGCAACATCATCAAATGT 2670 >seq360 Length=27789 Score = 107 bits (118), Expect = 6e-18 Identities = 222/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088 || ||||||||||| || |||||||| | | || |||| ||| | || | ||| | Sbjct 8781 CCCACAGCATCAATCTCATCAATGAACACAATGCAAGGAGC-TTTGGACTTGGCTTTGTC 8839 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || || | || | || || || | ||||||| ||| ||||||||| || || || Sbjct 8840 GAACAAGTCCCGCACTCTTGAAGCACCCACACCAACAAACAGTTCTACAAACTCTGAGGC 8899 Query 289149 GG-ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | || ||| ||||| ||| ||||| || || || |||| |||||||| || | Sbjct 8900 AGCACACGAGAA-GAATGGCACACCAGCTTCACCGGCCACGGCCCGGGCCAGAAGAGTTT 8958 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| ||||| | | ||| || ||||| | ||| || ||| || Sbjct 8959 TTCCGGTACCAGGCGGTCCTACAAGGAGACACCCTTTTGGGATTTTAGCTCCAAGAGCTG 9018 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | || || |||||| | || || || || || | ||| | | |||| || || | | Sbjct 9019 TGTACTTGTCAGGGTTTTTCAAGAAATCAACCACTTCTTGCAATTCAAGCTTGGCTTGGT 9078 Query 289328 CACATCCTGCTACATCAGCAAAAGT 289352 || ||| || |||||||||||||| Sbjct 9079 CAGCTCCAGCAACATCAGCAAAAGT 9103 >seq29839 Length=13537 Score = 100 bits (110), Expect = 8e-16 Identities = 367/566 (65%), Gaps = 9/566 (2%) Strand=Plus/Plus Query 133082 ATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTT 133141 |||||||||||| | | | || ||| ||||||| || ||| ||| | || Sbjct 4279 ATGTTCCCAATTCATTATCCTCAAATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTC 4338 Query 133142 TGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGG 133201 |||||| | ||||| ||| | || |||||| |||||||||| || | ||| Sbjct 4339 TGGACTGCCGAGGAAGTCGATCTCTCACAAGACCTTCGCCACTGGGAATCCTTAACTTCT 4398 Query 133202 GATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGT 133260 || || |||||||| || || ||| | | || || || ||||| |||||| || || Sbjct 4399 GACGAGAAACATTTCATCACTCATG-TCCTTGCCTTCTTCGCTGCTTCTGATGGCATCGT 4457 Query 133261 TCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320 | | || ||| | | |||||| ||| |||||| ||| | || ||||| | || || Sbjct 4458 TTTGGAGAATCTCGCCGGACGGTTCATGAAAGAAGTCCAAGTTGCTGAAGCTAGAGCTTT 4517 Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380 ||||| | || ||||| || || || |||||||| | || | ||| |||| Sbjct 4518 CTATGGATTCCAAATTGCCATCGAGAACATCCATTCCGAGATGTACAGTCTTCTCCTTGA 4577 Query 133381 TACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAAT-TTC 133439 || || |||||| || | | ||||| | | ||| || ||| | | | | | Sbjct 4578 AACCTATATCAAAAATTCAAACGAGAAGAATCGGTTGTTCCGTGCTATT-GAAACTGTCC 4636 Query 133440 CTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTT 133499 | ||| | || ||||| |||| ||||| | || ||||| | || | || | Sbjct 4637 CCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATTGATAGCACGGAATCG---T 4693 Query 133500 TTGCTACTCGTCTCGTTGCTTTTG-CTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 | || ||| | | || |||| |||| || ||||| ||||| ||| ||| ||| Sbjct 4694 TCGCCGAGCGTATTTTGGCGTTTGCCTGT-GTTGAGGGAATTTTCTTCTCAGGTAGTTTC 4752 Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618 ||||| ||||| ||| | ||||| ||||| | | |||||| | || || ||||| Sbjct 4753 TGCTCCATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTAACGTTCTCAAACGAG 4812 Query 133619 CTTATTTCAAGGGACGAGGCACTTCA 133644 | |||||| | || || | ||||| Sbjct 4813 TTGATTTCACGAGATGAAGGGCTTCA 4838 >seq25252 Length=11111 Score = 98.7 bits (108), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||||| || ||||||||| | ||| | | || |||| ||| ||| Sbjct 7837 ACAGACATGGATCCTATAAGCATCACTTTGATCAAACAACCTCTCCTTAAGGAAATGAGC 7896 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||| || ||||||||||| || || || |||||||||||||| || Sbjct 7897 AGCACCATGGGCAATCATGCAGTCACGCTCCATCTCCCCAAATCGAAGACCACCATCACG 7956 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | || |||||| ||||| || | || || | || |||||| | || ||| Sbjct 7957 CGACCGACCCTCAGCAGGTTGTCTCGTAAGGATCTGCACAGGACCCCTTCCACGTGAATG 8016 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 | || |||| ||||||||||| || | |||||| | | ||||| | ||| || Sbjct 8017 TATTTTGTCATCAACCATATGCTTCAGCCTTTGGTAGTAGGTCGGACCAAGGAATAT 8073 >seq9269 Length=8543 Score = 95.1 bits (104), Expect = 4e-14 Identities = 157/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| |||||||||||||| ||||| ||||| |||||||| | |||||| || | | Sbjct 7957 TACCTTTCCTCTTGCCACCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCA 7898 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC--CAGATGA 156163 ||||||| | ||| ||||| || || ||||| ||||| ||||||| ||| | ||| Sbjct 7897 GCATAGGCACAATCCCATTAGATGTCCCATTTGTTCCACGAATAT---AACTGCCCATGG 7841 Query 156164 G-CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 || | ||| || || | ||||||||||| | | || ||| ||| |||| Sbjct 7840 CACGGATATTGTGGATGGAAACACCAATACCACCAGCTGACTTGCTAATAACAGCACATT 7781 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | |||| |||| | || ||||| ||| |||||| | ||| Sbjct 7780 CTTTTAAGGTATCATATATTCCTTCTATACTATCATCCTTCAT 7738 >seq36543 Length=42890 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | ||||| ||||| || || || | |||||||| | ||||||||||||| Sbjct 17300 TGCAAAGAGATCTCTCACACGAGAGGCACCCATGCCAACATATAGTTCTACAAATTCACT 17359 Query 289146 AGCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || |||| || || | ||| | ||||| || || |||||| |||| | ||| Sbjct 17360 AGCAGAACAACTT--ATAAAGGGTACTTCAGCTTCCCCAGCGACTGCCTTCGCTAAAAGA 17417 Query 289204 GTCTTACCTGTTCCAGGTGGTCCC 289227 ||||| ||||| || ||| | ||| Sbjct 17418 GTCTTGCCTGTCCCCGGTAGACCC 17441 >seq27295 Length=128642 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 29469 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 29410 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 29409 GGGACCATTTTTTT 29396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471058616779576