Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq8682 201 1e-46 seq16876 167 3e-36 seq7398 167 3e-36 seq1209 143 3e-29 seq11821 102 9e-17 seq13736 89.7 6e-13 seq3977 89.7 6e-13 seq33924 87.8 2e-12 seq14341 84.2 2e-11 >seq8682 Length=13014 Score = 201 bits (222), Expect = 1e-46 Identities = 195/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 158273 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 158332 ||||| || || ||||| || || || || |||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 158333 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 158392 || ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 158393 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 158452 | || | ||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 158453 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGT 158512 ||| |||| |||||||| | || |||||||| ||| | | ||||| ||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 158513 ATGGAAGTTAT 158523 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 167 bits (184), Expect = 3e-36 Identities = 204/277 (74%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 158297 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158354 || || ||| |||||||||| ||| | ||||||||||||||||| || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 158355 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 158414 | ||||| |||||||| | || | |||||| || | || | ||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 158415 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158474 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 158475 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158534 | |||||| ||||| | | |||| ||| |||||||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 158535 ACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 | || || |||||||| || ||||| ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 167 bits (184), Expect = 3e-36 Identities = 209/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 159936 GCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACT 159995 |||||||| || | || ||| | ||||||||| || || ||||| || ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 159996 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160055 ||||||||||| ||||| | ||||| || |||| ||||| || || || ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 160056 TTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGC 160115 ||||| ||||| ||||| || || | ||| | |||| || |||| | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 160116 CTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGAT 160175 | | |||| || ||||| || || ||||| ||| || || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 160176 CCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGG 160222 || |||||||||| ||||| |||||||| || || || ||| |||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq1209 Length=37697 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 ||||| | ||||||||||||||||| || | | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 158297 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158354 || || |||||||||||||| ||| | ||||||||||| | ||| || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 158355 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 158414 ||||| ||||||| || | |||||||||||||| | || | ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 158415 TCAACCTGAACGGTTTCAACTTCAAC 158440 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq11821 Length=47813 Score = 102 bits (112), Expect = 9e-17 Identities = 142/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 |||||||| ||| |||| || || || ||| | ||| | ||||||||| | ||||| Sbjct 4320 TACATTCTCGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGAGCTGGG 4261 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGA----TCAGAGTGATCA 158865 ||||||||| | ||||| ||| || | || || || || || || ||||| ||||| Sbjct 4260 GCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCGGGGACAGTGGACCAGTCAGACGGATCA 4201 Query 158866 GTCGTTCTTAGACGATGATCAGATTGCAGCAGGATT-TGTTCTTACGTGTGTAGCATATC 158924 ||||| ||||| | ||||| | || ||| | ||| || || || || ||||||| Sbjct 4200 ----TTCTTGGACGACAAGCAGATGG-AGAAGGGGTATGTCCTGACCTGCGTTGCATATC 4146 Query 158925 CAACATCTGATTGTGT 158940 || |||||||||||| Sbjct 4145 CACAATCTGATTGTGT 4130 >seq13736 Length=68382 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 158741 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 158800 || ||| |||||||||||| |||||| || ||| ||||| || |||||| || Sbjct 10051 GATGATGTATACATTCTAGATCAAGCAGAGGATTTGGGAATTGATCTTCCTTACTCATGC 9992 Query 158801 CGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 158860 | || || |||||||||| |||||||| ||| | ||||| || | || |||||| Sbjct 9991 AGGGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCA 9932 Query 158861 GAT--CAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAG 158918 ||| ||| ||| | || ||||||||| || || ||| | ||| | || ||||| | Sbjct 9931 GATGGCAG--CTTCCTTGATGATGATCAGGCTGAAGAAGGTTGGGTTTTAACTTGTGTTG 9874 Query 158919 CATATCC 158925 | ||||| Sbjct 9873 CTTATCC 9867 >seq3977 Length=13071 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 158495 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTC 158554 ||||| ||| |||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 158555 GACCTTGCTGCT 158566 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq33924 Length=56609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 |||||||| || ||||| ||||||||||||||||| | ||| ||||| | || || Sbjct 50064 TACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGC 50005 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 || || ||| | || || || ||||| || || || | ||||||||| || |||| Sbjct 50004 GCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGACGGGTCG 49945 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTT-ACGTGTGTAGCATATCCAAC 158928 ||| | || ||| ||| || |||| ||| || || || || || || ||| ||||| Sbjct 49944 TTCCTTGATGATAGTCAAATGGCAG-AGGGTTATTTGTTAACCTGCGTTTCATTACCAAC 49886 Query 158929 ATCTGATTGTGT 158940 | || ||||| Sbjct 49885 GGCGGACTGTGT 49874 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 158300 CGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 || |||||||||||||| ||| | ||||||||||| ||||| || || |||||||| | Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTT 158385 |||| | |||||| || || |||||||| Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548098512839360