Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq7398 187 3e-42
seq8682 168 7e-37
seq16876 154 2e-32
seq1209 131 2e-25
seq3485 113 5e-20
seq3977 95.1 1e-14
>seq7398
Length=4807
Score = 187 bits (206), Expect = 3e-42
Identities = 214/288 (74%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 153001 GCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 153060
||||| || ||| | ||||| || ||||||| ||||| || ||||| ||||| |||
Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253
Query 153061 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 153120
|| ||||| || |||||| | || ||||| |||||||| ||||||||| ||| | |||
Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313
Query 153121 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGT 153180
||||||||| | |||||||| || | ||| | |||| | || ||||| | |||||
Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373
Query 153181 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGAT 153240
| | | || || ||||| || || || || ||||| ||||| | | | ||||||
Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433
Query 153241 CCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGT 153288
||| |||||||||| |||||||| || ||||| || || ||| |||||
Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481
>seq8682
Length=13014
Score = 168 bits (186), Expect = 7e-37
Identities = 188/251 (75%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 151532 ATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAAT 151591
||||| || || || ||||| ||||| || | ||||||||||| || ||||||||
Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019
Query 151592 TCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCA 151651
|| ||||| | || |||||||| || || |||||||| || ||||| |||||||| ||
Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079
Query 151652 CTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATG 151711
| ||| | ||||| ||||| |||||| | || |||||||| |||||||| || | |
Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139
Query 151712 GATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGT 151771
||| |||| || || | || |||||||| || || | |||||||| ||| |||
Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199
Query 151772 ATGGAAGTTAT 151782
|||||||||||
Sbjct 6200 ATGGAAGTTAT 6210
>seq16876
Length=31318
Score = 154 bits (170), Expect = 2e-32
Identities = 195/267 (73%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 151566 TCTTCCAATACGCT--TCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATG 151623
|||||||||| ||| | |||||||| |||||||| | || || ||||| || || ||
Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117
Query 151624 GCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAA 151683
|||||| | |||| |||||| || | ||| | ||||| ||||| |||||| | ||
Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173
Query 151684 CGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGC 151743
||| || |||||||| | | | ||| |||| || | || | | |||||| |
Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233
Query 151744 AGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 151803
||| || | |||| ||| ||| |||| |||||||||||| || |||||||| || ||
Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293
Query 151804 CTTCCCTCTCGACCTTGCTGCTGCTGA 151830
||||||||| ||||| ||| ||| |||
Sbjct 28294 CTTCCCTCTAGACCTAGCTACTGTTGA 28320
>seq1209
Length=37697
Score = 131 bits (144), Expect = 2e-25
Identities = 153/206 (74%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTT 151555
||||| | ||||||||||| ||||| || | | ||||| || || || ||||| |||
Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561
Query 151556 GGTCGTCTCATCTTCCAATACGCT--TCCTTCAACAATTCCCGTTCGCTGCACTTCTTCC 151613
|| || | ||||||||||| ||| | |||||||| || | ||| | || |||||||
Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621
Query 151614 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCAT 151673
|| || ||||||| || ||||||||||||| || | ||| | ||||| ||| | |
Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681
Query 151674 TCAACCTGAACGGTTTCAACTTCAAC 151699
||||| |||| |||| || ||||||
Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707
>seq3485
Length=85743
Score = 113 bits (124), Expect = 5e-20
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 152369 TGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 152428
||||||||||| | ||| ||||||||||||||||| |||||||| || || | || |
Sbjct 21345 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 21404
Query 152429 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 152488
|||| ||| ||| |||| | || |||||| |||| || || || || | || |
Sbjct 21405 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 21464
Query 152489 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG 152525
||||||| || || ||||||||||||||| |||| ||
Sbjct 21465 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501
>seq3977
Length=13071
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 151754 AACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTC 151813
|||||||| ||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74
Query 151814 GACCTTGCTGCT 151825
||||| ||||||
Sbjct 75 GACCTAGCTGCT 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549345884970560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |