Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq7398 187 3e-42 seq8682 168 7e-37 seq16876 154 2e-32 seq1209 131 2e-25 seq3485 113 5e-20 seq3977 95.1 1e-14 >seq7398 Length=4807 Score = 187 bits (206), Expect = 3e-42 Identities = 214/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 153001 GCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 153060 ||||| || ||| | ||||| || ||||||| ||||| || ||||| ||||| ||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 153061 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 153120 || ||||| || |||||| | || ||||| |||||||| ||||||||| ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 153121 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGT 153180 ||||||||| | |||||||| || | ||| | |||| | || ||||| | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 153181 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGAT 153240 | | | || || ||||| || || || || ||||| ||||| | | | |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 153241 CCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGT 153288 ||| |||||||||| |||||||| || ||||| || || ||| ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq8682 Length=13014 Score = 168 bits (186), Expect = 7e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 151532 ATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAAT 151591 ||||| || || || ||||| ||||| || | ||||||||||| || |||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 151592 TCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCA 151651 || ||||| | || |||||||| || || |||||||| || ||||| |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 151652 CTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATG 151711 | ||| | ||||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 151712 GATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGT 151771 ||| |||| || || | || |||||||| || || | |||||||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 151772 ATGGAAGTTAT 151782 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 154 bits (170), Expect = 2e-32 Identities = 195/267 (73%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 151566 TCTTCCAATACGCT--TCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATG 151623 |||||||||| ||| | |||||||| |||||||| | || || ||||| || || || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 151624 GCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAA 151683 |||||| | |||| |||||| || | ||| | ||||| ||||| |||||| | || Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 151684 CGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGC 151743 ||| || |||||||| | | | ||| |||| || | || | | |||||| | Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 151744 AGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 151803 ||| || | |||| ||| ||| |||| |||||||||||| || |||||||| || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 151804 CTTCCCTCTCGACCTTGCTGCTGCTGA 151830 ||||||||| ||||| ||| ||| ||| Sbjct 28294 CTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 131 bits (144), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTT 151555 ||||| | ||||||||||| ||||| || | | ||||| || || || ||||| ||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 151556 GGTCGTCTCATCTTCCAATACGCT--TCCTTCAACAATTCCCGTTCGCTGCACTTCTTCC 151613 || || | ||||||||||| ||| | |||||||| || | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 151614 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCAT 151673 || || ||||||| || ||||||||||||| || | ||| | ||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 151674 TCAACCTGAACGGTTTCAACTTCAAC 151699 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3485 Length=85743 Score = 113 bits (124), Expect = 5e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 152369 TGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 152428 ||||||||||| | ||| ||||||||||||||||| |||||||| || || | || | Sbjct 21345 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 21404 Query 152429 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 152488 |||| ||| ||| |||| | || |||||| |||| || || || || | || | Sbjct 21405 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 21464 Query 152489 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG 152525 ||||||| || || ||||||||||||||| |||| || Sbjct 21465 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501 >seq3977 Length=13071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 151754 AACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTC 151813 |||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 151814 GACCTTGCTGCT 151825 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549345884970560