Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq8682 152 6e-32 seq1209 125 8e-24 seq16876 120 3e-22 seq9099 93.3 5e-14 seq3485 93.3 5e-14 seq3977 86.0 7e-12 >seq8682 Length=13014 Score = 152 bits (168), Expect = 6e-32 Identities = 188/255 (74%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 72928 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAAC 72987 || || ||||||||||| || || || |||| |||||||| |||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 72988 TCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCA 73047 |||||||| ||||| |||||||| |||| | |||||||| || | ||||| ||| | Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 73048 ATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTA 73107 | ||||| | || ||||| |||||| | || || ||||| ||||||||||| || || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 73108 GATG--CAAA--CGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCT 73163 ||| ||| || | | |||| |||| ||| || ||||| | || || || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACC----TGGGCTGATATTATTAACCGTGCTAATCT 6195 Query 73164 TGGAATGGAAGTTAT 73178 ||| ||||||||||| Sbjct 6196 TGGTATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 125 bits (138), Expect = 8e-24 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 72892 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 72951 || |||| ||||| ||||| |||||||| | | | || || ||||||||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 72952 GGTAGATTAATCTTCCAGTATGC--ATCATTCAACAACTCTCGTTCATTACACTTCTTCC 73009 || |||| |||||||| ||||| || ||||||||||||| ||| ||||| ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 73010 TCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCAT 73069 |||| | |||| ||| || | ||||| ||| | | ||||| | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 73070 TCAACCTTAACGGATTCAACTTCAAC 73095 ||||| | || || | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 120 bits (132), Expect = 3e-22 Identities = 191/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 72956 GATTAATCTTCCAGTATGCA--TCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 |||| ||||||| ||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 28052 GATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGC 28111 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | |||||| | || ||| || | | ||||| | || ||||| ||||| Sbjct 28112 TGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAA 28167 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 73133 | | || | | || |||||||||| || || ||| | || | | | | || Sbjct 28168 CTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATAC 28227 Query 73134 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 73193 ||| |||| || ||||| || || ||||| | |||||||||||||||| | ||||| Sbjct 28228 CTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGC 28287 Query 73194 ACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 || |||||||| ||||||||||| ||| ||| Sbjct 28288 GCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq9099 Length=14125 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/271 (67%), Gaps = 11/271 (4%) Strand=Plus/Minus Query 73406 TTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGG 73465 ||| || | ||||| |||| || || || |||||||| || | || ||||||||||| Sbjct 887 TTCCTCTGTTGGTCCAGTCTATTGCTCTTTCCTTGTGCCTATTTTGCTGTCGGAGGTTGG 828 Query 73466 TTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATT-----------GCAT 73514 || ||| || || | || || |||||||| || |||||||| ||| Sbjct 827 TTTACAGGTACAACCTCTGTAACTTCATGGTATACCCATGGTATACCCATGGATTGGCAA 768 Query 73515 CCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTA 73574 || ||| | || ||| || || |||||||| ||| | || || |||| | || | Sbjct 767 GTTCCTATTTGGAAGGATGCAACTTCTTAACTGCTGCAATTTCGACTCCTGCTAATAGTT 708 Query 73575 TGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGT 73634 | | || | | ||||| | ||||| | || ||| |||||||| || | |||| Sbjct 707 TAGCCCACTCTTTGTTGTTATTATGGGGTCTTGAAGCATAAGGAGATTTTACTTGTTGGT 648 Query 73635 TTCAATTAGGTGGACTATGGAACTTTGTAGC 73665 |||||||||||| || |||| ||||| || Sbjct 647 GTCAATTAGGTGGTCTGTGGATTTTTGTTGC 617 >seq3485 Length=85743 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 21347 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 21406 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 |||||||| || | || ||||||||||||| ||| || || || || || |||||| Sbjct 21407 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 21466 Query 73496 TACACACATGGTATTG 73511 || || ||||| |||| Sbjct 21467 TATACCCATGG-ATTG 21481 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 73141 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 73200 ||| || | ||| | || || ||||| |||||||||||||||||| | ||||| |||||| Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65 Query 73201 TTCCCACTAGACCTAGC 73217 ||||| ||||||||||| Sbjct 66 TTCCCTCTAGACCTAGC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572585387291840