Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq29839 154 2e-31 seq32741 91.5 2e-12 >seq29839 Length=13537 Score = 154 bits (170), Expect = 2e-31 Identities = 215/297 (72%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||||||||| || ||||| || || || || || | || || |||||| Sbjct 4553 GAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGG 4494 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||||| ||||| || ||||| |||||||| || || ||||| Sbjct 4493 ACTTCTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAG 4434 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTC-GTCGCTGAGCGACACCCAGTG--G 869809 || || ||||| || |||| || || |||||| | | | || || ||||||| | Sbjct 4433 AAGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAG-GATTCCCAGTGGCG 4375 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| | | ||| || || |||||||| ||||||| ||||| ||||| || ||| Sbjct 4374 AAGGTCTTG--TGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTG 4317 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||||||||| | ||| | || | || ||||| | | ||||| | ||||||| Sbjct 4316 TACATCTCCCAGATTTGAGGATAATGAATTGGGAACATGCAGAAGCGATCGGGGTTG 4260 >seq32741 Length=168981 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||||||| ||||||| |||| ||| | || || | ||||| || Sbjct 92902 GCTGCAAACTACCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGAC 92961 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| | || ||||||||||||||||| |||||||||||| ||| Sbjct 92962 ATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACG 93016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103836260638616