Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq21318 102 7e-17 seq18711 91.5 1e-13 seq22339 89.7 4e-13 seq3045 89.7 4e-13 >seq21318 Length=12341 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| ||||| || || |||||||| || ||| | ||| |||| || | Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| ||||| || || || ||| | || || || Sbjct 4912 -GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCA 4854 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | |||| ||| ||||| ||||| || || | ||| || | || ||||| || Sbjct 4853 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAA 4794 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| ||||| |||||||| ||||| | || |||| || |||| Sbjct 4793 CATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGTGGTGGAA 4744 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || || || || ||||| ||||| || | ||| || Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| ||| | | || || |||||| ||||| || || | || || || Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGAATCCCACCTGACCA 4398 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| || ||||| || || |||| |||||| | || |||||||| Sbjct 4397 GCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATGGCAGAACTTTAGCTGATTACAA 4338 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| ||||| || | || ||||| | ||||||| ||||| Sbjct 4337 CATCCAAAAGGAATCAACTCTCCATTTGGTGCTTCGACTGCGTGGGGG 4290 >seq18711 Length=80062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || ||||| | ||||| |||||||| ||| | || ||| Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || || ||||| || ||||| || | ||| ||| || Sbjct 40209 CGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 40268 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| || | || |||||||| || || |||| | | || ||||||| ||||| Sbjct 40269 GCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 40328 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || ||||| || ||||| | ||| | | || || || |||| Sbjct 40329 CATTCAGAAGGAATCAACATTGCATTTAGTGCTCCGTCTTCGTGGTGGAA 40378 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | ||||||||||| || ||| | || || | Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | ||||| || ||| || |||||||| | || || || Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| || || || ||||| ||||||| |||| | || ||||| ||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||||||||| || | || ||||| Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGTG 40131 >seq22339 Length=139203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | |||||||| ||||| ||| | || ||| | Sbjct 90764 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 90705 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | ||||| ||||| ||||||||||| | ||| ||||| Sbjct 90704 GATACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 90645 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | || || || || || ||||||| | | || |||| || |||||| Sbjct 90644 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAAC 90585 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| || ||||| | ||| |||| Sbjct 90584 ATCCAAAAGGAGTCTACTCTCCACCTGGT 90556 >seq3045 Length=115554 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | ||||| || ||||| ||| | || ||| || Sbjct 11494 ATGCAAATTTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 11435 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| ||||| | ||| || ||| Sbjct 11434 GACACAATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 11375 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || ||||| |||| |||| | |||| | || ||||||||| Sbjct 11374 CAGAGACTCATCTTTGCTGGGAAACAATTGGAAGATGGCCGAACTCTTGCAGATTACAAC 11315 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || ||||| Sbjct 11314 ATCCAGAAGGAGTCTAC 11298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412639091906264