Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq29839 120 5e-21 seq32741 91.5 2e-12 >seq29839 Length=13537 Score = 120 bits (132), Expect = 5e-21 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 |||||||| || |||||||| || ||||| || ||||| |||||||| || || Sbjct 4499 ACTTGGACTTCTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCA 4440 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC-GTCGCTGAGCGAGACCCA 796277 ||||| ||||| ||||| || |||| || || |||||| | | | || || |||| Sbjct 4439 GCGAAGAAGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAG-GATTCCCA 4381 Query 796278 GTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTT 796337 |||| ||| ||| ||||| |||||||| ||||| |||||||| ||||| || Sbjct 4380 GTGGCGAAGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTT 4321 Query 796338 TTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTT 796397 |||||||||||||| || | | || | || ||||||| ||||||| |||||| Sbjct 4320 CTTGTACATCTCCCAGATTTGAGGATAATGAATTGGGAACATGCAGAAGCGATCGGGGTT 4261 >seq32741 Length=168981 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||||||| ||||||| | | || |||||| || |||| ||||| || Sbjct 92902 GCTGCAAACTACCTCAACATCAAAAGCTTGCTTGATTTGACTTGTCAGACGGTGGCTGAC 92961 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||| ||| | || ||||| ||||||||||| |||||||||||| ||| Sbjct 92962 ATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACG 93016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911965036668872