Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq21318 111 1e-19 seq18711 96.9 3e-15 seq22339 89.7 4e-13 seq3045 86.0 5e-12 >seq21318 Length=12341 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| ||||| || || |||||||| || ||| | ||| |||| ||| Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| ||||| || ||| | || || || Sbjct 4912 -GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCA 4854 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| | |||| ||| ||||| ||||| || |||| || || | || || || || Sbjct 4853 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAA 4794 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||| || |||||||| ||||| | ||||||| || |||| Sbjct 4793 CATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGTGGTGGAA 4744 >seq18711 Length=80062 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || ||||| | || || |||||||| ||| | || ||| ||| Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| ||| | || || ||||| |||||||| || | ||| ||| | Sbjct 40209 -CGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACC 40267 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | || |||||||| || || || | | || |||||||||||| Sbjct 40268 AGCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACA 40327 Query 107734 ACATTCAAAAGGAGTCTACGTTGCA 107758 ||||||| ||||| || || ||||| Sbjct 40328 ACATTCAGAAGGAATCAACATTGCA 40352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || ||||| || ||||| ||||| | ||| ||| | Sbjct 40605 AATGCAAATTTTTGTGAAGACCTTAACCGGAAAAACAATTACTTTGGAAGTTGAGAGTTC 40664 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || ||| ||||| ||||||||||| | || || || Sbjct 40665 AGATACTATCGACAACGTTAAAGCTAAGATACAAGATAAAGAAGGGATCCCACCAGACCA 40724 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| | |||| || || || || ||||||| | || || | || ||||| || Sbjct 40725 ACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAGGATGGCAGGACTCTAGCCGACTATAA 40784 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 ||||||||||| || || | ||| ||||| || | | || || || || ||| Sbjct 40785 TATTCAAAAGGAATCGACTCTCCACTTGGTGCTGCGTCTTCGTGGAGG----GATGCAAA 40840 Query 107795 TATTTGTA 107802 |||||||| Sbjct 40841 TATTTGTA 40848 >seq22339 Length=139203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | || ||||| ||||| ||| | || ||| | Sbjct 90764 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 90705 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | ||||| ||||| || |||||||| | ||| |||||| Sbjct 90704 GATACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 90645 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | || || || || || ||||| | | || |||| ||||||||| Sbjct 90644 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAAC 90585 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| | ||| |||| Sbjct 90584 ATCCAAAAGGAGTCTACTCTCCACCTGGT 90556 >seq3045 Length=115554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || ||||| || || |||||||| ||| | || ||| | | Sbjct 11266 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAAACCATCACCCTTGAGGTCGAGAGTTCC 11207 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || || ||| ||||| |||||| | ||| || ||| Sbjct 11206 GATACCATCGACAATGTTAAGGCGAAAATTCAGGATAAGGAAGGCATCCCCCCAGACCAG 11147 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||||| ||||| | | || | || ||||||||| Sbjct 11146 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGAAGGACTCTTGCTGACTACAAC 11087 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 11086 ATTCAGAAGGAGTCAAC 11070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398681141954872