Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq18711 127 3e-24 seq21318 123 4e-23 >seq18711 Length=80062 Score = 127 bits (140), Expect = 3e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||||||| | || || || | | Sbjct 40607 TGCAAATTTTTGTGAAGACCTTAACCGGAAAAACAATTACTTTGGAAGTTGAGAGTTCAG 40666 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | || || ||| ||| |||||| ||||||||| || ||||| || |||| Sbjct 40667 ATACTATCGACAACGTTAAAGCTAAGATACAAGATAAAGAAGGGATCCCACCAGACCAAC 40726 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| || || || ||||| || ||| || || || | || ||||||| Sbjct 40727 AGAGGTTAATTTTCGCTGGGAAGCAATTGGAGGATGGCAGGACTCTAGCCGACTATAATA 40786 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||||||| |||| || || Sbjct 40787 TTCAAAAGGAATCGACTCTCCACTTGGT 40814 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || |||||||| || |||| || ||| | | Sbjct 39923 TGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCTG 39982 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | |||||||| ||||| || ||||||||| ||||| || || || | Sbjct 39983 ATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAGC 40042 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || ||||| || || || || | || ||| | |||| | | |||||||| | Sbjct 40043 AGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAACA 40102 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||||||||||| || | ||||| || | || ||| | || || Sbjct 40103 TACAAAAAGAATCAACCCTACATTTGGTGCTCCGTTTACGCGGTGG 40148 >seq21318 Length=12341 Score = 123 bits (136), Expect = 4e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||||||||||| | || || |||||||| || | || || ||| | Sbjct 5427 TGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCAG 5368 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | |||||||| || || ||| |||||| |||||||||||||| |||| Sbjct 5367 ACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAAC 5308 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| ||||| ||| | || ||| ||||| | | ||||| |||| Sbjct 5307 AGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAATA 5248 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| || |||||||||| Sbjct 5247 TCCAGAAGGAATCTACACTCCATTTAGT 5220 Score = 107 bits (118), Expect = 3e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | ||||| || || || |||||||| || | || || || | | | Sbjct 4971 TGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA- 4913 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| ||| || ||| ||| || ||||||||||| || ||| Sbjct 4912 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 4853 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | |||||||| ||||| || | || || || || || |||||||||| Sbjct 4852 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAAC 4793 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 || ||||| |||||||| | ||||| || | ||||| Sbjct 4792 ATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATT 4755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785770879684160