Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18711 149 5e-31 seq21318 141 7e-29 seq3045 109 4e-19 seq26478 104 2e-17 seq14089 104 2e-17 >seq18711 Length=80062 Score = 149 bits (164), Expect = 5e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| ||||||||||| || || ||||||||||| ||||||||||| || | ||| ||| Sbjct 40139 AAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGA 40080 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| ||||| || || ||||| | || | || ||||| || || ||||| || ||| Sbjct 40079 CCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCT 40020 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || || || |||||| | || ||| | || | ||| |||||| ||| || ||||| || Sbjct 40019 TTATCCTG-AATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGT 39961 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || | ||||| || || || ||||| Sbjct 39960 TATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 138 bits (152), Expect = 9e-28 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | ||||| ||||| || |||||||| || || || || | || || Sbjct 40593 ACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCC 40534 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| || | ||||| |||||||| ||||| |||||||| ||||| Sbjct 40533 ATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTT 40474 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||||| | || | ||||| || ||| || || || || | Sbjct 40473 GTCTTG-AATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTAA 40415 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || | ||||| ||||| || |||||| Sbjct 40414 TAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATT 40377 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||||||||| || || || ||||| |||||||| ||||| || || Sbjct 40832 CCTCCACGAAGACGCAGCACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCT 40773 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | || || || || || || || || Sbjct 40772 AGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGG 40713 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| ||||||| || ||| || | || | ||| || ||| || ||| Sbjct 40712 ATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACT 40653 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || ||||| || |||||||| || ||||| || |||||| Sbjct 40652 TCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTGCATT 40605 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || ||||||||||| ||||| || | || || ||| || | ||| Sbjct 41036 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGT 40977 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | ||||| |||||||| || || || |||||||| ||||| || | ||| Sbjct 40976 TTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTA 40917 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || | || | |||||| || || || || | ||||| || || || ||| Sbjct 40916 GCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTT 40857 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| Sbjct 40856 AAGGTCTTTACAAATATTTGCAT 40834 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| ||||| | || ||||| || |||||||| || ||||| | || || Sbjct 40365 ACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCC 40306 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | ||| ||||| ||||| || ||||||||||| Sbjct 40305 ATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTT 40246 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || || ||| | || | || || || ||| || || | || || Sbjct 40245 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGAT 40186 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || | |||||| || || || |||||| Sbjct 40185 GGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCATT 40149 >seq21318 Length=12341 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| || || ||||| ||||| ||||| ||||| || | || | | Sbjct 4302 CGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCTAAAGTTCTGCCA 4361 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||||||||| ||| | |||| || ||||| || || || || ||||| ||| Sbjct 4362 TCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTG 4421 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| |||| || ||| | || | |||||| || ||||||||| ||||| || Sbjct 4422 TCTTG-AATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTGAT 4480 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || || || || || || ||||||||| Sbjct 4481 GGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCATT 4517 Score = 140 bits (154), Expect = 2e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||||||| || || ||||| || || || || || || |||| || ||| Sbjct 4986 CGAAGAACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCG 5045 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | |||| ||| || ||||| || || |||||||| ||| Sbjct 5046 TCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTG 5105 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | || |||||| ||| || |||||||| || Sbjct 5106 TCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATG 5165 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | ||| || |||||||| ||||| Sbjct 5166 GTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| || ||||||||||| | ||| ||||| ||||||||||||||||| || Sbjct 4745 TCCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGC 4804 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || || || || |||||| | ||||| || || || || || || Sbjct 4805 TAGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGG 4864 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| || ||||| | || ||| ||| | || | || || || || || Sbjct 4865 AATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCAC 4924 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||||||||| |||||||| ||||| |||||||| Sbjct 4925 TTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| || ||||| | || | || ||||| || || ||||| || || || Sbjct 4517 TCCACCACGCAATCGGAGCACAAGGTGCAATGTTGATTCCTTCTGGATGTTGTAGTCTGC 4576 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | | || || ||||| || |||||| |||||||||| || || || || || Sbjct 4577 TAAAGTCCTACCGTCTTCCAGTTGCTTACCAGCAAATATCAATCTCTGTTGGTCAGGTGG 4636 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||||||||||| | || ||| ||| | || | ||||| ||| ||| || Sbjct 4637 GATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTGTCTGAACTTTCGAC 4696 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || || || || || ||||| || || || || ||||||||| Sbjct 4697 TTCCAATGTGATTGTCTTCCCCGTTAATGTCTTCACGAAAATCTGCATT 4745 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| ||||| || || ||||| || || || || ||||| |||| || || ||| Sbjct 5217 AGCACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCATCC 5276 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || |||||| | || | || || || || || ||||| |||||||| ||| Sbjct 5277 TCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT 5336 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| || ||| | || | ||||| || ||| || || || || || || Sbjct 5337 TG-AATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGT 5395 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | |||||| | || || ||||| Sbjct 5396 TTTGCCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 >seq3045 Length=115554 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| ||| || || | ||||| || || || || |||||||| || || || Sbjct 11039 TCCTCCCCTCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGC 11098 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || || || || || ||| | ||||| || ||||| || || || Sbjct 11099 AAGAGTCCTTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 11158 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || || || |||||| | || ||| | || | || || ||| || | Sbjct 11159 GATGCCTTCCTTATCCTG-AATTTTCGCCTTAACATTGTCGATGGTATCGGAACTCTCGA 11217 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || ||||| ||||| || || ||||| || |||||||| Sbjct 11218 CCTCAAGGGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 11266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || |||||||| || ||||| || || |||| || || ||| || ||||| Sbjct 11976 TGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGC 12035 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | ||||| | |||||||||||| || || || || || || || | || Sbjct 12036 TTGCCGGCGAAGATCAAACGTTGCTGATCCGGGGGGATTCCTTCCTTATCCTGGATCTTG 12095 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || | || | |||||||| || || || || || || || ||||| || Sbjct 12096 GCCTTAACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCTGTG 12155 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||||||||| || || ||||| Sbjct 12156 AGGGTTTTAACGAAGATTTGCAT 12178 >seq26478 Length=75715 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| ||||| | || ||||||||||| || || || || || || ||| Sbjct 13965 CCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCA 13906 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || || || || || || | ||||| | ||||| || || || Sbjct 13905 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGG 13846 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | ||| |||||| | || | || || || || ||| Sbjct 13845 ATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACT 13786 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||| |||||| || || |||||||| Sbjct 13785 TCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq14089 Length=105206 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | | || ||||| ||||| || ||||| ||||| ||||||||||| ||| Sbjct 70557 CCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAATCGGCA 70616 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | ||| || |||||| | || ||||| ||||| || || ||| Sbjct 70617 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 70676 Query 29680 ATACCCTCTTTGTCTTG 29696 ||||| || ||||| || Sbjct 70677 ATACCTTCCTTGTCCTG 70693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385030241314968