Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq8682 174 2e-38 seq7398 159 4e-34 seq16876 134 2e-26 seq1209 105 7e-18 seq33924 95.1 1e-14 seq11821 87.8 2e-12 seq3977 86.0 7e-12 >seq8682 Length=13014 Score = 174 bits (192), Expect = 2e-38 Identities = 189/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 157744 ATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAAC 157803 ||||| ||||| || ||||| || || || ||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 157804 AGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCA 157863 | | | || |||||||| || || |||||||| || || || |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 157864 CTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTT 157923 | || | ||||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 157924 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGT 157983 ||| |||| |||||||| | || |||||||| ||| | | ||||| ||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 157984 ATGGAAGTTAT 157994 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 159 bits (176), Expect = 4e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 159396 TTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAG 159455 |||| ||||||| || ||||| || || | || ||| | ||||||||| || Sbjct 2173 TTATTTGAGGATGAGGATGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAA 2232 Query 159456 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTT 159515 || |||||||| |||||||||||||||||||| ||||| | ||||| || |||| ||| Sbjct 2233 GAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTT 2292 Query 159516 TCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 159575 || || || || ||| | |||||||||||||| ||||| || || | ||| |||||| Sbjct 2293 TCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATG 2352 Query 159576 TCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAA 159635 | |||| | ||||| | | | || || ||||| || || ||||| ||| Sbjct 2353 AGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAG 2412 Query 159636 GAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCT 159691 || || | | ||| |||||||| ||||||| || ||||| ||||| || ||||| Sbjct 2413 GAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCT 2468 >seq16876 Length=31318 Score = 134 bits (148), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 157775 TGATCTTCCAATACGCT--TCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGC 157832 || |||||||||| ||| | ||||||||| | | | | || || ||||| || || Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 157833 ATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCT 157892 |||||||| | || | |||||| || | || | ||||| ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 157893 CAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTG 157952 || ||| || |||||||| | | ||||| |||| |||| ||| | | ||||| Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 157953 GGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACA 158012 | ||||| | | |||| ||| |||||||| ||||||||||||||| ||||| || || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 158013 CAACTTCCCACTGGATCTTGCTGCTG 158038 |||||||| || || || ||| ||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTG 28316 >seq1209 Length=37697 Score = 105 bits (116), Expect = 7e-18 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 157708 GGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTC 157767 ||||| | ||||||||||| ||||| || | | ||||| ||||| || ||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 157768 GGTCGCCTGATCTTCCAATACGCT--TCATTCAACAACAGCAGAAGTCTT--CACTTCTT 157823 || || ||||||||||||| ||| | ||||||||| | |||| || ||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAAC--TCTCATTCTTTACATTTCTT 32619 Query 157824 CCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGC 157883 || || || ||||||| || | ||||||||||| || | || | ||||| ||| | Sbjct 32620 CCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGAC 32679 Query 157884 ATTCAACCTCAACGGTTTCAACTTCAAC 157911 |||||| | || |||| || |||||| Sbjct 32680 TTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq33924 Length=56609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAAC-TACTCTTGTCGTGCTGG 158280 |||||||| || ||||| ||||||||||||||||| ||| | || ||||| | || || Sbjct 50064 TACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGA-CTTACCTTATTCTTGCAGGGCAGG 50006 Query 158281 TGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTC 158340 || || ||| | || || || ||||| || || || | ||||||||| || ||| Sbjct 50005 CGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGACGGGTC 49946 Query 158341 GTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTT-ACGTGTGTAGCATATCCAA 158399 |||||| || ||| |||||| |||| ||| || || || || || || ||| |||| Sbjct 49945 GTTCCTTGATGATAGTCAAATGGCAG-AGGGTTATTTGTTAACCTGCGTTTCATTACCAA 49887 Query 158400 CATCTGATTGTGT 158412 | | || ||||| Sbjct 49886 CGGCGGACTGTGT 49874 >seq11821 Length=47813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 |||||||| ||| |||| || || || ||| | ||| | |||||||| | ||||| Sbjct 4320 TACATTCTCGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGAGCTGGG 4261 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGA----TCAGAGTGATCA 158337 ||||||||| | ||||| ||| || | || || || || || || ||||| ||||| Sbjct 4260 GCTTGCTCTACTTGTGCCGGTCAAGTAGTTTCGGGGACAGTGGACCAGTCAGACGGATCA 4201 Query 158338 GTCGTTCCTAGACGATGATCAAATCGCAGCAGGATT-TGTTCTTACGTGTGTAGCATATC 158396 ||| | ||||| | || || | || ||| | ||| || || || || ||||||| Sbjct 4200 ----TTCTTGGACGACAAGCAGATGG-AGAAGGGGTATGTCCTGACCTGCGTTGCATATC 4146 Query 158397 CAACATCTGATTGTGT 158412 || |||||||||||| Sbjct 4145 CACAATCTGATTGTGT 4130 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 157966 AACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTG 158025 ||||| ||| |||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 158026 GATCTTGCTGCT 158037 || || |||||| Sbjct 75 GACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544999272851840