Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq8682 174 2e-38 seq1209 140 4e-28 seq16876 104 3e-17 seq33924 98.7 1e-15 seq3485 95.1 1e-14 >seq8682 Length=13014 Score = 174 bits (192), Expect = 2e-38 Identities = 189/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 178251 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAAC 178310 ||||| || || |||||||| || || || |||||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 178311 TCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCA 178370 || ||||| | || |||||||| || || ||||||||||| || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 178371 CTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTC 178430 | ||| | ||| ||||| || ||| | ||||| ||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 178431 GACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGC 178490 || | ||||| ||||| | || || ||||| || | | |||||||| ||| || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 178491 ATGGAAGTCAT 178501 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 140 bits (154), Expect = 4e-28 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 ||||| | ||||| ||||| |||||||| | | | ||||| || || |||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 178275 GGTCGTTTGATCTTCCAATATGC--ATCGTTCAACAACTCCCGTTCACTGCACTTCTTCC 178332 || || ||||||||||||||||| || ||||||||||| | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 178333 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCAT 178392 || || ||||||| ||| | |||||||||||||| | ||| | ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 178393 TTAACCTCAATGGATTCAACTTCAAC 178418 | ||| | ||||| | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 104 bits (114), Expect = 3e-17 Identities = 186/269 (69%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 178275 GGTCGTTTGATCTTCCAATATGCA--TCGTTCAACAACTCCCGTTCACTGCACTTCTTCC 178332 || || ||| ||||||||||||| | ||||||||||||||||| | || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 178333 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCAT 178392 | || || ||||||||| | || | |||||| || | ||| | ||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 178393 TTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCA 178452 | ||| | ||| | | || |||||||| | | | || | ||||| | ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 178453 ACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAA 178512 | || ||| |||| | | |||| ||| ||| || | |||||| ||||| ||| | | Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 178513 ATAGCACATAACTTCCCGCTTGATCTTGC 178541 || || || |||||||| || || || || Sbjct 28284 AT-GCGCAAAACTTCCCTCTAGACCTAGC 28311 >seq33924 Length=56609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| ||||| |||||||| ||||| |||||||| |||| | || || || | Sbjct 50075 CTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTT 50016 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | | || || || |||||||| || || || ||| | ||| || | || ||||||| Sbjct 50015 GCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGT 49956 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 | ||| ||| |||||||||||| ||||| |||| || | | | | || ||||| Sbjct 49955 CGGACGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTT 49896 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||| || || | || ||| | ||| | || | || || | ||||| Sbjct 49895 CATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACT 49847 >seq3485 Length=85743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 178939 TTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 178998 |||||| | ||||||||||| | |||| || || || ||||| |||||||| || Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 178999 CTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTT 179058 || | || |||| ||| ||| ||||| | || |||||| |||| || ||| | ||| Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 179059 GTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG 179105 || || ||||| |||||||| | || ||||||||| | ||||| Sbjct 21455 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605362488831680