Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq26478 131 2e-25 seq22339 127 2e-24 seq3045 122 8e-23 seq18711 113 4e-20 seq8166 107 2e-18 seq21318 105 6e-18 seq31175 100 3e-16 >seq26478 Length=75715 Score = 131 bits (144), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 ||||| || ||||| |||||||| ||| | | || || || ||||| |||||||| | Sbjct 13935 GTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCG--TCCTCAAGCTGCTTTC 13878 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | |||||||||||||| ||||| || |||||||| ||||||| || Sbjct 13877 CGGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCT 13818 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || |||| | ||| || |||| ||| | ||| || || || || | Sbjct 13817 TGACATTGTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTCTTACCCGTTAGGG 13758 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||| ||||||||| Sbjct 13757 TTTTCACGAAGATCTGCATG 13738 >seq22339 Length=139203 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || |||||||| | | || ||||| |||||||| || Sbjct 89883 GGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCC 89942 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || |||| ||||||||| |||||||||||||||||||| ||| ||| || | Sbjct 89943 TGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CTGAATTTTAGCTT 90001 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | |||||| || | ||||| ||| || ||||||| | Sbjct 90002 TTACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAGG 90061 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 90062 TTTTCACGAAGATCTGCAT 90080 Score = 113 bits (124), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || |||||||| | | || |||| ||| || | ||||| Sbjct 90339 GGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGT--ACGACCGTCTTCTAATTGCTTC 90396 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| | || ||||| || || || ||||||||||| ||||||| | Sbjct 90397 CCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTTGCC 90456 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | || || | || || || |||| ||||| |||||| |||||||| Sbjct 90457 TTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCGGTCAGG 90516 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 90517 GTCTTAACGAAAATCTGCAT 90536 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||| ||| ||| ||| | | | |||||||| ||||| || Sbjct 90568 GTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCA-TCCTCGAGTTGCTTTCC 90626 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || ||||| || || || || ||||| ||||| |||||| ||| Sbjct 90627 GGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTT 90686 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | | ||| || || | ||||| ||| ||||||||||| || Sbjct 90687 TACGTTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 90746 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||||||| |||||| Sbjct 90747 CTTGACGAAAATTTGCATG 90765 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || || || || ||||| ||| ||| ||| | | | |||||||| ||||| | Sbjct 90795 GGTTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCA-TCCTCGAGTTGCTTTC 90853 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| || ||||| || || || || ||||||||||| |||||| || Sbjct 90854 CGGCGAAAATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 90913 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || || | ||||| ||| ||||| || || | Sbjct 90914 TGACGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGG 90973 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 90974 TTTTAACGAAGATTTGCAT 90992 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || || || || ||| || || || ||| Sbjct 90103 AAGTGCAAGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCTTCCAGC 90162 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || ||||||||| || ||||| || |||||||| |||| Sbjct 90163 TGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATC 90222 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||| | ||| || || | ||||| ||| |||||| Sbjct 90223 TTAGCCTTAACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAGGGTGATGGTCTTGCCG 90282 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 90283 GTCAATGTCTTGACGAAAATCTGCAT 90308 >seq3045 Length=115554 Score = 122 bits (134), Expect = 8e-23 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || ||||| |||||||| ||| | | || || || ||||| || ||||| | Sbjct 11754 GTTGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCG--TCCTCAAGTTGCTTTC 11811 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| || ||||||||||| || || ||||||||||| |||||| | Sbjct 11812 CAGCGAAGATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTT 11871 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||||| || |||||| |||| ||||| || || ||||| || | Sbjct 11872 TTACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGG 11931 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||| || |||||| Sbjct 11932 TTTTGACGAAGATTTGCATG 11951 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || | || | || ||||||||| || |||||||||||||| Sbjct 11112 TCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTA 11171 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| | ||| | | || | || |||| ||| || || | ||||| Sbjct 11172 TC-CTGAATTTTCGCCTTAACATTGTCGATGGTATCGGAACTCTCGACCTCAAGGGTGAT 11230 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || |||| ||| || ||||| |||||||| Sbjct 11231 GGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 11266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| | | || | | | || || | || || || Sbjct 11298 GTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCA-TCTTCCAATTGTTTCCC 11356 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| | ||| ||||| || || || ||||||||||| ||||| ||| Sbjct 11357 AGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTT 11416 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || || | ||||| ||| || ||||| ||||| Sbjct 11417 CACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGT 11476 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || ||||| |||||| Sbjct 11477 TTTCACAAAAATTTGCATG 11495 >seq18711 Length=80062 Score = 113 bits (124), Expect = 4e-20 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| ||| || ||||| ||||| || |||||| | | || ||| | |||||||| Sbjct 40127 AAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCA-TCCTCGAG 40069 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| |||| ||||||||| ||||| || ||||| || || ||| Sbjct 40068 CTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCTTTATC-CTGAA 40010 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | |||| || || | || || || | ||| | ||||||| Sbjct 40009 TTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTTATTGTTTTGC 39950 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| ||||| || ||||| Sbjct 39949 CGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||||||| ||| || | | | ||||| | ||| || | Sbjct 41031 GGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCA-TCCTCCAACTGTTTTC 40973 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | || ||||||||||||||||| || |||||||| ||| || || Sbjct 40972 CAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCT 40913 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | || | ||| || || || | | Sbjct 40912 TCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTTAAGG 40853 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| || || ||||| Sbjct 40852 TCTTTACAAATATTTGCAT 40834 >seq8166 Length=147256 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | | || ||| | ||||| |||||||| || Sbjct 120251 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA-TCCTCCAGCTGCTTACC 120309 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| || || || || |||||||| |||||| ||| Sbjct 120310 GGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTT 120369 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||| || |||| || | ||| || ||||| || || Sbjct 120370 AACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGT 120429 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 120430 TTTCACGAAGATCTGCAT 120447 >seq21318 Length=12341 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAG 133513 ||||| | || || || ||||| |||||||||||| | | || | | | | ||||| || Sbjct 5223 AAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCA-TCCTCAAG 5281 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || |||| ||| |||||||| || ||||| || || || || Sbjct 5282 TTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGAAT 5341 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | |||| ||||| | | ||||| |||| ||||| |||||||| Sbjct 5342 CTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTGCC 5401 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||||| ||| || ||||| Sbjct 5402 AGTAAGGGTTTTTATGAAGATTTGCAT 5428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || || |||| | || ||| ||||| || || ||||| ||||| Sbjct 4817 GTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTT 4876 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||||| || | | |||| || || | | |||||| || | ||||| Sbjct 4877 ATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCACTTCCAAGGTGAT 4936 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| |||| ||||| || ||||||||||| Sbjct 4937 TGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || || ||||| || | || |||| ||||||||| || ||||| || |||||| Sbjct 4362 TCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTG 4421 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||||||| | || || || | |||| | Sbjct 4422 TCTTGAATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTGATG 4481 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || |||||||||||||| Sbjct 4482 GTCTTGCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 >seq31175 Length=13598 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || || || || ||||| ||| ||| ||| | | | |||||||| ||||| | Sbjct 7470 GGTTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCA-TCCTCGAGTTGCTTTC 7528 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| | ||||| || || || || ||||||||||| |||||| || Sbjct 7529 CGGCGAAAATGAGAAGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCT 7588 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||| || || | ||||| ||| ||||| || || | Sbjct 7589 TGACGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGG 7648 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 7649 TTTTAACGAAGATTTGCAT 7667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483177590995520