Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18711 93.3 3e-14 seq3045 91.5 1e-13 >seq18711 Length=80062 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | |||||||||||| || |||||||||||||| ||||||| | Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||| || ||||| | | |||||| ||| | || Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || |||||| | | |||| ||| | || || ||| || Sbjct 40028 ATTCCTTCTTTATCCTGAATTTT-GGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 39970 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | ||||| || ||||| ||||| Sbjct 39969 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| ||||||||||||| | ||| ||| | || ||||| ||| Sbjct 41036 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGT 40977 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| || |||||||| | ||||| || | || | ||| || ||||| ||||| Sbjct 40976 TTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTA 40917 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 ||| || | ||| | ||||| ||| || || || | || || || || || Sbjct 40916 GCCTTC-ACGTTGTCAATAGTGTCTGAGCT---CTCAACCTCCAATGTTATGGTCTTTCC 40861 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || |||||||| || ||||| Sbjct 40860 TGTTAAGGTCTTTACAAATATTTGCAT 40834 >seq3045 Length=115554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | || | || ||||| ||| || || |||||||| || | Sbjct 11040 CCTCCCCTCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCA 11099 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || || | || ||||||||||| ||||| | |||||| ||| | || Sbjct 11100 AGAGTCCTTCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 11159 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||||| | | ||||| ||| | ||| ||| || || Sbjct 11160 ATGCCTTCCTTATCCTGAATTTTC-GCCTTAACATTGTCGATGGTATCGGAACTCTCGAC 11218 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| || || || || || || |||||||||||| Sbjct 11219 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAGATCTGCATA 11267 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| |||||| || || || ||||||||||||| Sbjct 11496 CCACCGCGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCA 11555 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || ||||||||||| ||||| | |||||| ||| | || Sbjct 11556 AGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGG 11615 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | |||||| || || || || |||| || | |||||| || ||||| Sbjct 11616 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGACGACTCCACC 11675 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||| ||||| Sbjct 11676 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 11722 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | ||| ||||| ||| || || ||||||||||| | Sbjct 11267 ACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGC 11326 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||||||||| || ||||| || | | ||| || ||| | || Sbjct 11327 AAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGG 11386 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || ||| || | ||| | ||||| || || | Sbjct 11387 AATACCTTCCTTGTCTTGAATCTTGGCCTTC-ACGTTGTCAATTGTGTCTGAAGACTCAA 11445 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 11446 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328542763292160