Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq8682 179 1e-40 seq16876 123 7e-24 seq1209 122 3e-23 >seq8682 Length=13014 Score = 179 bits (198), Expect = 1e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 20198 ATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAAT 20257 |||||||| ||||||||||| ||||| || |||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 20258 AGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCC 20317 |||||| |||| |||||||| ||||| ||||| || ||||| ||||||||| | || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 20318 TTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTC 20377 || || || || ||||| || || | || |||||||| || ||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 20378 GACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGG 20436 || | | |||||||| ||| |||| |||||||| ||| | || ||||||||||| || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 6198 >seq16876 Length=31318 Score = 123 bits (136), Expect = 7e-24 Identities = 190/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 20220 TTGGACGTTTGATCTTCCAATACGCT--TCTTTCAACAATAGCCGTTCTCTACACTTCTT 20277 |||| || ||| |||||||||| ||| | ||||||||| ||||||| |||| || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 20278 CCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGC 20337 ||| ||||| ||||| || |||| | |||| | || || || || || ||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 20338 GTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCAT 20397 || || | || ||| || || ||||| | | | || | | |||| ||| || Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 20398 TGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACG 20457 | |||| ||| | || ||| | || | ||||||||| || || || ||||||||||| Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 20458 GAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||| || |||||||| || ||||| || Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGC 28311 >seq1209 Length=37697 Score = 122 bits (134), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||| | || || ||||| ||||| || | | | |||||||| ||||||||||| ||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 20222 GGACGTTTGATCTTCCAATACGCT--TCTTTCAACAATAGCCGTTCTCTACACTTCTTCC 20279 || || |||||||||||||| ||| | ||||||||| | |||| |||| ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 20280 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 20339 ||||| ||||| | ||| | || |||||| | || || || || || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 20340 TTAATCTGAACGGTTTCAACTTTAAC 20365 | || |||| |||| || || ||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148757668019184