Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq8682 168 2e-37 seq1209 122 3e-23 seq16876 120 9e-23 >seq8682 Length=13014 Score = 168 bits (186), Expect = 2e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 29326 ATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAAT 29385 |||||||| ||||| ||||| ||||| || ||||||||||||||||| |||||| || Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 29386 AGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCC 29445 |||||| |||| |||||||| ||||| ||||| || ||||| ||||||||| | || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 29446 TTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTC 29505 || || || || ||||| || || | || ||||| || || ||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 29506 GACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGC 29565 || | | |||||||| |||||||| ||||||||| || | || || ||||| || || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 29566 TTTGAAGTAAT 29576 | ||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 122 bits (134), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||| | || || ||||| ||||| |||| | | |||||||| ||||| ||||| ||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 29350 GGACGTTTGATCTTCCAATATGCT--TCTTTCAATAATAGCCGTTCTCTACACTTCTTCC 29407 || || |||||||||||||||||| | |||||| || | |||| |||| ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 29408 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 29467 ||||| ||||| | ||| | || |||||| | || || || || || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 29468 TTAATCTGAACGGTTTTAACTTTAAC 29493 | || |||| |||| || || ||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 120 bits (132), Expect = 9e-23 Identities = 191/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 29348 TTGGACGTTTGATCTTCCAATATGCT--TCTTTCAATAATAGCCGTTCTCTACACTTCTT 29405 |||| || ||| |||||||||||||| | |||||| || ||||||| |||| || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 29406 CCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGC 29465 ||| ||||| ||||| || |||| | |||| | || || || || || ||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 29466 GTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCAT 29525 || || | || ||| || || ||||| | | | || | | |||| ||| || Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 29526 TAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCG 29585 | |||| ||| | ||| || | || | ||||| || || ||||| |||||||| || Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 29586 TAATGCTCATAACTTCCCACTTGATCTGGCTAC 29618 |||||| || |||||||| || || || ||||| Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGCTAC 28314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146595501909808