Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq8682 170 5e-38 seq1209 116 1e-21 seq16876 111 4e-20 seq33024 91.5 4e-14 >seq8682 Length=13014 Score = 170 bits (188), Expect = 5e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 19417 ATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAAT 19476 || || ||||||||||| |||||||| || | || ||||| || ||| |||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 19477 AGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCC 19536 |||||| |||||||||| | |||||||||||||| || || |||||||| |||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 19537 CTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTT 19596 | || | ||||| ||||| |||||||| ||||| || || || ||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 19597 GACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGG 19655 || | | |||||||| ||| |||| |||||||| ||| | || |||||||| || || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 6198 >seq1209 Length=37697 Score = 116 bits (128), Expect = 1e-21 Identities = 147/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 19390 TTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTT 19449 || || ||||| ||||| |||| | | || || ||||||||||| |||||||| || | Sbjct 32511 TTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 32570 Query 19450 ATTTTCCAGTACGC--ATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTT 19507 || ||||| || || || |||||||| | |||| |||||||||| ||||||| Sbjct 32571 ATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTT 32630 Query 19508 GGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGA 19567 |||||| || | || ||||| |||| | || | ||||| ||| | |||||||||| Sbjct 32631 GGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGA 32690 Query 19568 ATGGCTTTAACTTTAACCAG 19587 |||| || || ||| | ||| Sbjct 32691 ATGG-TTGAAATTTCAACAG 32709 >seq16876 Length=31318 Score = 111 bits (122), Expect = 4e-20 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 19468 TTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGG 19527 |||||||| ||||||| ||||||| || | |||||||||||||| | || | | Sbjct 28077 TTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTGGCCTGTAATAGGTA----G 28132 Query 19528 TTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAG 19587 || | || | || | ||||| ||||| |||||||| ||| | | || || ||||| Sbjct 28133 TTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATTGTTGAAATTTCAACCAA 28192 Query 19588 TCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 19647 | | |||| | | |||| ||| ||| |||| ||| | || ||| | || | |||| Sbjct 28193 TTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCCAGATATTATTAACCATGCT 28252 Query 19648 AACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 || || || || || ||||| ||||||||||| || |||||||| || || | ||| Sbjct 28253 AATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAACTTCCCTCTAGACCTAGCT 28312 Query 19708 AC 19709 || Sbjct 28313 AC 28314 >seq33024 Length=63753 Score = 91.5 bits (100), Expect = 4e-14 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| || || |||||||| | Sbjct 16450 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 16509 Query 18783 GATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCA 18840 ||||| ||| | || ||| | || ||| | ||| || |||||||||||||||| ||| Sbjct 16510 GATGA-TCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGTTGCT 16567 Query 18841 CCTCCTGTAGACATTG 18856 ||||| ||||| |||| Sbjct 16568 CCTCCAGTAGATATTG 16583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141081338636784